Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1557 102 1e-16 >seq1557 Length=14215200 Score = 102 bits (112), Expect = 1e-16 Identities = 186/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 183014 ATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTT 183073 ||||| || ||||| | | ||| | ||| || || | || ||||||||||| | | Sbjct 1364482 ATGACGACCTGTGGAACTCGGCGCAACTGCAGCTGGTGCGCGAGGGAAAAATGCACGGCT 1364541 Query 183074 TTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTT 183133 |||| || ||||||||||| |||||||| || ||||||||| || ||||| | || | Sbjct 1364542 TTTTGCGCATGTACTGGGCCAAAAAGATTCTGGAATGGACAGCGACACCGGAGCAGGCGT 1364601 Query 183134 TGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGACGGTACG-GATCCTAACGGA 183192 || || ||| ||||| | |||||| || || || ||| || || ||||| Sbjct 1364602 TGGAATACGCAATCCTACTGAACGACAAGTACAGTCTGGATGG-ACGCGACCCCAACGGC 1364660 Query 183193 TACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCT 183252 || || ||||| |||||||| ||| |||| | || || | | ||||| || | || Sbjct 1364661 TATGTCGGTTGCATGTGGTCCATTGGCGGCGTCCATGACATGGGCTGGAAGGAGCGGGCT 1364720 Query 183253 ATATTTGGAAAGATAAGATATATGAATTAT 183282 | || || ||| | | || ||||| ||| Sbjct 1364721 GTCTTCGGTAAGGTTCGGTACATGAACTAT 1364750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903244848120160