Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1555 89.7 1e-12 >seq1555 Length=7220098 Score = 89.7 bits (98), Expect = 1e-12 Identities = 223/338 (66%), Gaps = 3/338 (1%) Strand=Plus/Minus Query 110667 AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATAT 110726 || ||| |||| | ||| | ||||| ||| | || |||||||| | ||| ||| Sbjct 5751936 AATGGTACTTCCAATGGGTTGGTTCCCATGCTGAGGGTCTTCAATAATGTGGCACGTTAT 5751877 Query 110727 GTGAATCA---AGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCAT 110783 ||| |||| ||| || ||| | || | ||||| || ||| | ||||| ||||| Sbjct 5751876 GTGGATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTATTTGGAACCCTGGCAC 5751817 Query 110784 TCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCA 110843 || ||| | ||||| ||| | ||||| || || || ||||| | | ||| Sbjct 5751816 TCGGATGTCTTTGAGTTCCTGGAACTGAAGAAGAACACGGGCAAAGAAGAGAATCGCGCA 5751757 Query 110844 CGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAAT 110903 || ||| | ||||| || ||||||| | ||| | ||||||||||| ||| | | || Sbjct 5751756 CGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTTGAGGCCAAC 5751697 Query 110904 GGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAA 110963 || ||||| || ||||| || || | ||||||||| || || | || | Sbjct 5751696 GGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCTGGTCTCCACGAAGTGTGGGGCGAT 5751637 Query 110964 GAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 || || ||| | || ||||| ||||| || |||| || Sbjct 5751636 GAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGG 5751599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186588799839491