Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1556 102 2e-16 seq1554 91.5 3e-13 seq1555 87.8 4e-12 >seq1556 Length=7591821 Score = 102 bits (112), Expect = 2e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || |||||| | || || ||| || ||||| |||| || ||| Sbjct 3893179 ACCGGAAAGACCATCACTCTTGAGGTAGAACCGTCGGACACCATCGAGAATGTTAAGGCT 3893120 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || ||||| | || || || | || ||||||||||| ||| Sbjct 3893119 AAGATTCAGGATAAGGAGGGAATCTCCCCAGATCAGCAGCGTCTCATCTTCGCCGGCAAG 3893060 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||| ||| | || || ||||||||||| ||||||| ||||| || |||||| Sbjct 3893059 CAACTGGAAGACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCGACCCTTCAC 3893000 Query 206374 CTTGTT 206379 | ||| Sbjct 3892999 TTGGTT 3892994 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||||||||| || || || ||||| | || Sbjct 3893644 AAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCGGACACCATTGAGAAT 3893585 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || ||||| || || || | || |||||| Sbjct 3893584 GTGAAGGCTAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAGCAGCGTCTCATCTTC 3893525 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| ||||||| ||| | || || ||||||||||| ||||||| ||||| Sbjct 3893524 GCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCG 3893465 Query 206365 ACTCTTCACCTTGTT 206379 || |||||| | ||| Sbjct 3893464 ACCCTTCACTTGGTT 3893450 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || | || ||||| || ||||| | || || || Sbjct 3895486 AAAATG---CAGATCTTTGTGAAGACCTTGACCGGAAAGACCATCACCCTCGAGGTAGAG 3895430 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 |||||||| | || || ||| |||||||| || || || |||||| || Sbjct 3895429 CCGTCTGACACCATTGAGAATGTTAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCA 3895370 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || || | || |||||||||||||||||| | || |||||| | || || | ||| Sbjct 3895369 GATCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCCTGTCGGAT 3895310 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||| ||||||| ||||| || |||||| | ||| || | || ||| Sbjct 3895309 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTGCGTCTGCGA 3895262 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| | || || || |||||| || | || || ||| Sbjct 3894775 ACCGGAAAGACTATCACCCTCGAGGTAGAGCCTTCTGATACCATTGAGAATGTTAAGGCT 3894716 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || |||||| || || || | || ||||||||||||||| Sbjct 3894715 AAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGAAAG 3894656 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || |||||| | || || | ||||||||| ||||||| ||||| || |||||| Sbjct 3894655 CAGCTTGAGGATGGACGCACCCTGTCGGATTACAACATCCAGAAGGAGTCGACCCTTCAC 3894596 Query 206374 CTTGTTTTGAGACTTCGA 206391 | ||| || | || ||| Sbjct 3894595 TTGGTTCTGCGTCTGCGA 3894578 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||||||||| || || || ||||| | || Sbjct 3892960 AAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCGGACACCATTGAGAAT 3892901 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || ||||| || || || | || |||||| Sbjct 3892900 GTGAAGGCTAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAGCAGCGTCTCATCTTC 3892841 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| ||||||| ||| | || | ||||||||||| ||||||| ||||| Sbjct 3892840 GCCGGCAAGCAACTGGAAGACGGACGCACCCTTTCCGATTACAACATCCAGAAGGAGTCG 3892781 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 3892780 ACCCTTCAC 3892772 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||||||||| || || || ||||| | || Sbjct 3894328 AAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCGGACACCATTGAGAAT 3894269 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || ||||| || || || | || |||||| Sbjct 3894268 GTGAAGGCTAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAGCAGCGTCTCATCTTC 3894209 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| |||| || ||| | || | ||||||||||| ||||||| ||||| Sbjct 3894208 GCCGGCAAGCAACTGGAGGACGGACGCACCCTTTCCGATTACAACATCCAGAAGGAGTCG 3894149 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | ||| | |||| || Sbjct 3894148 ACCCTTCACTTGGTTCTCCGACTGCG 3894123 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||||||||| || || || ||||| | || Sbjct 3893416 AAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCGGACACCATTGAGAAT 3893357 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || || |||||| || || || | || |||||| Sbjct 3893356 GTGAAGGCTAAAATCCAAGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATCTTC 3893297 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||| ||| | || || ||||||||||| ||||||| ||||| Sbjct 3893296 GCTGGCAAGCAATTGGAAGACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCA 3893237 Query 206365 ACTCTTCA 206372 || || || Sbjct 3893236 ACCCTCCA 3893229 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||||||||| || || || ||||| | || Sbjct 3894100 AAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCGGACACCATTGAGAAT 3894041 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || || |||||| || || || | || |||||| Sbjct 3894040 GTGAAGGCTAAAATCCAAGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATCTTC 3893981 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||| ||| | || || ||||||||||| ||||||| ||||| Sbjct 3893980 GCTGGCAAGCAATTGGAAGACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCA 3893921 Query 206365 ACTCTTCA 206372 || || || Sbjct 3893920 ACCCTCCA 3893913 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||||||||| || || || ||||| | || Sbjct 3895012 AAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCGGACACCATTGAGAAT 3894953 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || ||||| || || || | || |||||| Sbjct 3894952 GTGAAGGCTAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAGCAGCGTCTCATCTTC 3894893 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || |||| || ||| | || | ||||||||||| ||||||| ||||| Sbjct 3894892 GCCGGCAAACAACTGGAGGACGGACGCACCCTTTCCGATTACAACATCCAGAAGGAGTCG 3894833 Query 206365 ACTCTTCACCTTGTT 206379 || |||||||| ||| Sbjct 3894832 ACCCTTCACCTGGTT 3894818 Score = 84.2 bits (92), Expect = 5e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || |||| | || || ||| || ||||| |||| || ||| Sbjct 3893863 ACCGGAAAGACCATCAACCTTGAGGTAGAACCGTCGGACACCATCGAGAATGTTAAGGCT 3893804 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || ||||| || || || | || ||||||||||| ||| Sbjct 3893803 AAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 3893744 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || || ||| | || || ||||||||||| ||||||| ||||| || |||||| Sbjct 3893743 CAGCTTGAGGACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCGACCCTTCAC 3893684 Query 206374 CTTGTT 206379 | ||| Sbjct 3893683 TTGGTT 3893678 >seq1554 Length=6179234 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||||||||| || || || || || |||| Sbjct 592334 AAGACTCTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCATCCGATACCATCGAGAAC 592393 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || || || | | |||||| Sbjct 592394 GTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAGCGTTTGATCTTC 592453 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||||||||| || ||| | ||| || |||| |||||| ||||||| ||||| Sbjct 592454 GCCGGAAAGCAGTTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 592513 Query 206365 ACTCTTCA 206372 || ||||| Sbjct 592514 ACCCTTCA 592521 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||| || || || || | || Sbjct 592562 AAGACTCTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCATCCGATACCATTGAGAAC 592621 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || |||||||| || || || | | |||||| Sbjct 592622 GTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCAGATCAGCAGCGTTTGATCTTC 592681 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| || ||| | ||| || |||| |||||| ||||||| ||||| Sbjct 592682 GCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 592741 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 592742 ACCCTTCAC 592750 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||| || || || || | || Sbjct 592790 AAGACTCTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCATCCGATACCATTGAGAAC 592849 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || || || | | |||||| Sbjct 592850 GTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAGCGTTTGATCTTC 592909 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| || ||| | ||| || |||| |||||| ||||||| ||||| Sbjct 592910 GCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 592969 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 592970 ACCCTTCAC 592978 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||| || || || || | || Sbjct 593018 AAGACTCTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCATCCGATACCATTGAGAAT 593077 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || || || | | |||||| Sbjct 593078 GTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAGCGTTTGATCTTC 593137 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| || ||| | ||| || |||| |||||| ||||||| ||||| Sbjct 593138 GCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 593197 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 593198 ACCCTTCAC 593206 >seq1555 Length=7220098 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| | || || ||| || || || ||||| Sbjct 5837733 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGATACTATCGAAAAT 5837792 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || || || | || ||||| Sbjct 5837793 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 5837851 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||||||||| | || | | || || ||| | ||||| ||||| Sbjct 5837852 CGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAGTC 5837911 Query 206364 TACTCTTCAC 206373 ||||| ||| Sbjct 5837912 CACTCTGCAC 5837921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181597742034251