Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1555 354 8e-93 seq1558 122 8e-23 seq1554 95.1 1e-14 >seq1555 Length=7220098 Score = 354 bits (392), Expect = 8e-93 Identities = 1199/1841 (65%), Gaps = 46/1841 (2%) Strand=Plus/Plus Query 146571 CGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTG 146630 ||| || || || ||||||| ||| ||||| || ||||| || || | ||| |||| Sbjct 5750497 CGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTAAGACCTGCTTTCCAGGAGTA 5750556 Query 146631 ATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTG 146690 | ||| || ||||||| | | || | ||||| ||||| | || ||||| || Sbjct 5750557 AAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGGCCACATGTATGTTGAACGACTG 5750616 Query 146691 GCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTC-A 146749 || ||||||||||| || || ||||| ||||| | |||| || | ||| || | Sbjct 5750617 ACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTAATCGTG-GACTTGACTGAGA 5750675 Query 146750 TTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAA 146809 ||||||| | || || ||||| | || | | || || ||||||||||||| Sbjct 5750676 TTTCCCACACCGTCTTATACAGATCTCGCACCTTCTGGGGGATGGTCTCAATGTTTTGAA 5750735 Query 146810 TAGAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAA-AGGTTTAGTTT 146867 | || ||| || | | || || ||| | || ||| ||| | | || || | Sbjct 5750736 TCGATCCCCTGCTGGATATGATC-TGGTTCTTCATGTCGT-CGTCCCACAAGTCCAGCTC 5750793 Query 146868 AATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCT 146927 | ||||| | |||| || |||||||| || || ||||| | ||| || || | Sbjct 5750794 GGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCG 5750853 Query 146928 GAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGT 146987 | || | || | ||| | ||||| || || ||||| ||||| | ||| || ||||| Sbjct 5750854 GGTGTATATGTTCGTGGTGTAGGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGT 5750913 Query 146988 GGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTT 147047 | ||| || |||||| || || | || || || || | ||||| | ||| Sbjct 5750914 AGATGCAGTGGGCATGGGAGCAACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATGGA 5750973 Query 147048 GTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTG 147107 |||||||| | ||||||||||||| || ||| | || ||||||||||||||| Sbjct 5750974 CTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTG 5751033 Query 147108 GAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGC 147167 | | |||| || | || ||||| || | || ||| || ||| ||| || Sbjct 5751034 CAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTCGGTCTGGGC 5751093 Query 147168 CAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTT--T 147225 || ||| ||||| || || | || |||||||| ||||||||| || || | || Sbjct 5751094 CAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTCAA 5751153 Query 147226 AGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAA 147285 | ||| | ||||||||||| ||||| || | ||||| || | |||||||| || || Sbjct 5751154 AAGACCG--GCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAAT 5751211 Query 147286 CCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTG--CTGCGCTTCGCGCTCGCTA 147343 ||||| ||||| | ||| | || || ||| | ||| || | ||| || || | Sbjct 5751212 CCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTC-CTT-GCCTCCGGCA 5751269 Query 147344 TGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTG 147403 |||||| | |||| |||||| |||||||| || || || | || || | | Sbjct 5751270 GGGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTT 5751329 Query 147404 TTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGA 147463 ||||| |||| |||||||| || | ||| || | | ||| | ||| | ||||| Sbjct 5751330 CCTTGAGCTTCTTAAAATCATACGT--CTTCTCCGGCGTG-ACGAACATGTTGAGGGCGA 5751386 Query 147464 TAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGC 147523 | || |||| |||||||| || |||| || | | || | |||||||| | || Sbjct 5751387 TGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGC 5751446 Query 147524 ACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGT 147583 ||| ||||||||| || ||| |||| ||| ||||| ||||| |||| ||||| |||| Sbjct 5751447 ACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGT 5751506 Query 147584 CTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTAT 147640 | ||||||||||||||||| |||||||| ||||||| |||| ||| ||||| Sbjct 5751507 CCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACC--- 5751563 Query 147641 GCAGGTCCTGCGCTCGCACCCGCTGCCGATAG--CGGCCCTCGTTTTCGTACCGCTCGTA 147698 |||| || || | | ||| | | | | | || ||||| | ||||| |||||| Sbjct 5751564 ACAGGGATTGAGC-CTTAACCG-TTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTA 5751621 Query 147699 CAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACAT 147758 || | || || || ||||| | ||| || || ||||||| || || ||||| Sbjct 5751622 CAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGGGGCACAT 5751681 Query 147759 CAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGC 147818 |||||||| ||| || | ||||||| ||| || ||||| || | |||||| || Sbjct 5751682 GAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCCACAGGGC 5751741 Query 147819 GTACATAAGATCGCGCGCTTTGCAATCCTCGGC---GCCCATGTTGCGTTTCAAATTAAG 147875 ||| | |||||||| || || || ||| | |||| |||| |||| | || Sbjct 5751742 GTAAAACAGATCGCGTGC---GCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAG 5751798 Query 147876 CACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT 147935 | | ||| || | |||||||||||| | || | ||| | ||||| |||||| Sbjct 5751799 GAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACCGGGACGCTT 5751858 Query 147936 TCCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAG 147992 ||| ||||| || |||| || ||| || || || || | || |||||| ||| Sbjct 5751859 GCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCATGGGAACCAA 5751918 Query 147993 GCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCAC 148052 || | | ||| || || ||| ||| | |||| || || | ||||| Sbjct 5751919 CCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATGCAATGCAC 5751978 Query 148053 GTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTA 148112 ||| | || ||||| ||| || |||| || || ||||| | ||| | | || | Sbjct 5751979 GTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGACTTGAA 5752038 Query 148113 GATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAAT 148172 ||||| |||||| |||| | | | | || | |||||||| ||| ||||| Sbjct 5752039 AATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAACTGCGG--- 5752095 Query 148173 CCG---CGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTGACTC 148227 ||| || | || | || || ||||| || ||||| || | | ||| Sbjct 5752096 CCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGTGAAGTAGCGCTCCGACAG 5752155 Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287 | || ||| || || | || | ||||| || || || || || || | ||| ||| Sbjct 5752156 AAGAT--TATAGGTTTCCACGGCCGCATCGATATCCTCTCCATGGATTCCGATCGCAACG 5752213 Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCA 148347 ||||| ||||| ||||| ||||| || || | | ||| ||||||||||||| | Sbjct 5752214 CGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTCTTGAGAAGATAGGAA 5752273 Query 148348 TTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATC 148388 || || || ||| | ||||| || || || |||| || Sbjct 5752274 CGCTCCAGCGTCTTGAAGCCAAAATAGTTATAGCCAAAGTC 5752314 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | ||||| || | | ||||| || |||||||| ||||| | ||| Sbjct 5837939 ACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 5837880 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| |||||||| ||||||||||| || || Sbjct 5837879 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 5837820 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| || ||| | | ||| | |||||| | ||| || || || | Sbjct 5837819 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAG 5837760 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | ||| |||||||| Sbjct 5837759 AGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 5837718 >seq1558 Length=21120651 Score = 122 bits (134), Expect = 8e-23 Identities = 230/338 (68%), Gaps = 3/338 (1%) Strand=Plus/Plus Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600 |||| || || | ||||||||||| || | || | ||||||||| | |||||||||| Sbjct 3327918 CAATGCCAATAACGCCGCAGCCGATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCT 3327977 Query 51601 GATGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGA 51660 || | |||| ||||| ||| | ||||| || |||| |||| || | || Sbjct 3327978 CGTGTCCACCCTGGCCAAGATCATCGGCATCGGCGTGCACGACCACGGTGCGTCCGATGA 3328037 Query 51661 CGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGT 51720 ||| | |||| || ||||| ||| |||| | ||| || | |||| || || Sbjct 3328038 TGCTGTCGGCGCCAAAGAGCGTGATCTTCGAGTCGGTGATGTTGACCTTGGTGGGGCAGT 3328097 Query 51721 TGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAG 51780 | | | ||||| | ||||||| ||||| | ||| || || | || |||| Sbjct 3328098 CGC---CGGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGACGGTTCTCGTCGACGGGAG 3328154 Query 51781 CGCCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGG 51840 ||||||| || |||| || |||||||| || | ||| ||||||||||| || Sbjct 3328155 CGCCGTGCTCCTTGCCATACGGATTGAAGTGGGGTCCGGATGACATGCAGCCGTTGGTGT 3328214 Query 51841 TGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878 |||| || || ||||||||||||||||| ||||| ||| Sbjct 3328215 TGTCTCCAAACTCGTGCACGTGGAATCCATGCAGACCC 3328252 >seq1554 Length=6179234 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| ||||| || | | | ||||| || || |||||||||||| || || Sbjct 592767 CGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 592708 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || |||| |||| | |||||| |||||||| || || ||| Sbjct 592707 CGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCT 592648 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || | | || | ||||||| ||||| ||||| | Sbjct 592647 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAG 592588 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||||||| || | ||| ||||||||| Sbjct 592587 GTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 592546 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| ||||| || | | | ||||| || || |||||||||||| || || Sbjct 592995 CGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 592936 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || |||| |||| | |||||| |||||||| || || || Sbjct 592935 CGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCC 592876 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || | | || | ||||||| ||||| ||||| | Sbjct 592875 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAG 592816 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||||||| || | ||| ||||||||| Sbjct 592815 GTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 592774 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| ||||| || | | | ||||| || || |||||||||||| || || Sbjct 593223 CGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 593164 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || |||| |||| | |||||| |||||||| || || || Sbjct 593163 CGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCC 593104 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || | | || | ||||||| ||||| ||||| | Sbjct 593103 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAAG 593044 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||||||| || | ||| ||||||||| Sbjct 593043 GTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 593002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476523438005160