Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1555 91.5 1e-13 >seq1555 Length=7220098 Score = 91.5 bits (100), Expect = 1e-13 Identities = 501/788 (64%), Gaps = 19/788 (2%) Strand=Plus/Plus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 ||||||||| || || | |||||| || || || || | |||||||||||| || || || Sbjct 5750476 CACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGT-TT 5750534 Query 136698 TAAACCCTTC-TCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGG 136756 ||| ||| | | |||||| ||| ||||| || | || || |||| | || |||| Sbjct 5750535 TAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGG 5750594 Query 136757 CCACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGT 136816 |||| | || | ||| || |||||||| ||| | | || || || |||||||| | Sbjct 5750595 CCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCAT-T 5750653 Query 136817 TCAATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGC 136875 | ||| || || || | |||||||| | || ||| | || || || || | Sbjct 5750654 TTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTATACAGATCTCGCACCTTCTGG 5750713 Query 136876 GGAATTTCATCGATATTCTGTACAGATCC---GTTGTTTTTGATGATTTTCATCATGAGA 136932 || || || || || || | ||||| | || | |||| ||| ||||| Sbjct 5750714 GGGATGGTCTCAATGTTTTGAATCGATCCCCTGCTGGATATGATCTGGTTCTTCATGTCG 5750773 Query 136933 TCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGA 136992 || ||| | | || ||| | || | | | ||| || || || || || Sbjct 5750774 TC-GTC--CCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGG 5750830 Query 136993 TATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCG 137052 ||||||| || || |||| || ||| | || | ||| | |||||||| ||||| Sbjct 5750831 AATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGCTCGAAGGATTCA 5750890 Query 137053 TTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTC 137112 ||||| |||| ||||| || || | || || |||||| ||| | | || || ||| Sbjct 5750891 TTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACGAGCAGGGAGTTC 5750950 Query 137113 CGTAAACCGTGTACGGCCAATTG--TTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCG 137170 || | |||||| | | | || | ||| | | | ||||| |||||| ||||| Sbjct 5750951 CGGACACCGTG--CTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAG---GTTCG 5751005 Query 137171 ATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCAT 137230 | | | | ||||| || ||||||||| ||| || | || || | | | Sbjct 5751006 TTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGT 5751065 Query 137231 AAGAATCATATGTTCCGTGCAGT-TTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAG 137289 | | || |||| || | | || | |||||||| || | | ||||||||| Sbjct 5751066 AGGTTTCGTATGCACC-TTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAG 5751124 Query 137290 TAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATA 137349 ||||| |||||| | || | |||||| | ||||||| ||| ||||| || | | Sbjct 5751125 TAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCTTCGCTTTCGTACGGGAAA 5751184 Query 137350 TCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTA 137409 || | | || ||||| || | ||| |||||||| || || | || | ||| | Sbjct 5751185 CGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTC 5751244 Query 137410 AAATTTGA 137417 ||||| || Sbjct 5751245 AAATTGGA 5751252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445012441429920