Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1553 291 9e-74 >seq1553 Length=5866729 Score = 291 bits (322), Expect = 9e-74 Identities = 481/688 (70%), Gaps = 12/688 (2%) Strand=Plus/Plus Query 146825 CAAAATCTTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGG 146884 |||| ||||| | ||| || || ||||||| |||| | | ||| | ||||||| Sbjct 1124530 CAAAGTCTTCGAAGCGGAAGTCCTCGATGTCCTGCACCTGACGTTTAATGATCAGCTTGG 1124589 Query 146885 GGAAGGGTCGGGG-GTTC-CTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTA 146942 | |||||||| || || | ||| ||| || ||||| ||||| |||||||| ||||| Sbjct 1124590 GAAAGGGTCGCGGTGTGCGCTG--CAGTTGCTCCTTCAGCGGCTCTACGTGGTTCAGGTA 1124647 Query 146943 GACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGC 147002 |||||| | || |||| |||||| |||||||| |||||||| || || ||||| ||||| Sbjct 1124648 GACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGC 1124707 Query 147003 CACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTC 147062 | ||||| ||||||||| | |||| ||| ||||| ||||| || |||||||||||||| Sbjct 1124708 AATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTAAAGGGTACGCCCAGGCCCATGTC 1124767 Query 147063 CCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG------TCGGCCACGTAAAACTG 147116 | |||||||||||||||||||| ||||| ||| |||| ||||||||||| Sbjct 1124768 GGCGCTTCTCTGGTACAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACGTAAAACTG 1124827 Query 147117 GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGA 147176 || | ||||||||||||||| ||||| || | |||| || ||||| ||||| Sbjct 1124828 CGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCCAAGCCGA 1124887 Query 147177 GACCACCAGCCGCCTGCTCT-CGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCT 147235 | | | || | | ||| ||| || || | || ||||| || | ||||| Sbjct 1124888 CATGATGATGCGTC-GGTCTGAGGGCTTATTCCTGATGGTGTCGATCACTTGGCGCAGCT 1124946 Query 147236 GGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCC 147295 |||| | ||||| ||| | |||||| ||||| ||||| ||||| || |||| Sbjct 1124947 GGTCGATGCCCTTGCCGCTGTAGTTATCGTCGCAGGTGCCGTACTGCGCCCCGAAATGCC 1125006 Query 147296 TCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCC 147355 ||||||||||||||||||| || ||||| ||||| || | || ||| ||| | Sbjct 1125007 TCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGACTCGGCCCGTGAACCCCATCT 1125066 Query 147356 GCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCT 147415 | || || || ||| | || | ||||||||| ||| ||| || ||| Sbjct 1125067 TGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCCTGCAGCA 1125126 Query 147416 CCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAA 147475 || | |||||| ||| | |||||| ||||||||||| ||| | | | | Sbjct 1125127 GTTTGGCGTCCGTCTTGCCTGCCACGAACCACAGCAGCTCCTCTGCCACCGCGCGGAAGA 1125186 Query 147476 AGACCCTCTTGGTGGTCAGCAGGGGGAA 147503 |||| | ||| |||||||| ||||| || Sbjct 1125187 AGACACGCTTCGTGGTCAGGAGGGGAAA 1125214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583380557978400