Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1557 210 3e-48 seq1556 89.7 7e-12 >seq1557 Length=14215200 Score = 210 bits (232), Expect = 3e-48 Identities = 365/523 (70%), Gaps = 21/523 (4%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--A 1455853 |||| ||||| || || ||||||| ||||||||| || | | | || || || | Sbjct 5422487 AGGCTGAGGCTTCTTTCTGGACCGTCGAGGAGGTGGATTT----GTC--CAAGGACCTTA 5422434 Query 1455854 CTGGGTGTCGC----TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909 ||| || | | ||| ||||||||||||||||||||| |||||| || ||||| | Sbjct 5422433 CTGACTGGCACCGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCT 5422374 Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969 | ||||||| ||||||||||| ||||||||||| | ||||| | | ||||| Sbjct 5422373 T-CGCCGCCTCTGATGGCATCGTAAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTG 5422315 Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029 || | | |||||||| | || ||||| |||||||||||||| || ||| | ||||| Sbjct 5422314 CAGATCACGGAGGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCG 5422255 Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089 || | ||| | |||||||||| ||| || ||| || | || || |||| Sbjct 5422254 GAGATGTACAGTGTTTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTG 5422195 Query 1456090 TTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGG 1456149 || ||| ||||| ||| ||||| | |||| | ||||| |||||||| || ||| Sbjct 5422194 TTCAACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGG 5422135 Query 1456150 A--TCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGA 1456206 | ||| | | | |||| | || | ||||| || ||| |||||||| ||| || Sbjct 5422134 ATCTCATCCAAGTCGGCC----AATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGA 5422079 Query 1456207 GGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCAT 1456266 |||||| || ||| ||||| ||| | |||| || ||||| ||||||||||| || || Sbjct 5422078 GGGCATTTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGAT 5422019 Query 1456267 GCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||| || || ||| |||||| | ||| ||||||||| Sbjct 5422018 GCCTGG-ATTGACCTTCTCCAACGAGCTGATCTCTCGCGACGA 5421977 Score = 89.7 bits (98), Expect = 7e-12 Identities = 156/222 (70%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| ||| || || | || ||| | ||||| ||| ||| | ||||| || Sbjct 5421902 AGATCATCCGCGACGCGGTGGCCATAGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTCA 5421843 Query 1456581 CGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 | ||||||||||| || ||| | |||| |||||||||||| || || || |||| Sbjct 5421842 ATTTGATCGGCATGAATTGCGACC--TGATGTCCCAGTACATTGAGTTC-GTAGCGGACC 5421786 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 | |||||| || | | ||| ||| ||| |||| || ||||| || | Sbjct 5421785 GTTTGCTCGTGGAGTTGGGCGTTGGA-AAGATCTACAACACCAAAAACCCATTTAACTTC 5421727 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||||| |||| ||||| || || |||||||||||||||||| Sbjct 5421726 ATGGAGATGATATCGCTGGACGGAAAGACCAACTTTTTCGAG 5421685 >seq1556 Length=7591821 Score = 89.7 bits (98), Expect = 7e-12 Identities = 229/346 (66%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 || || || ||||| || ||| ||| | | ||| |||| | || || | ||||||| Sbjct 4127852 AATCGTAGCATGGCGCAGCGGGACTGGATAGGCTCTATGATC-TTCTCGCTGGTGTTGCA 4127910 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 |||||||||||| || || || || | | | ||||||||| || || ||||| || Sbjct 4127911 GGCCAGGGCAAAACGAGTGGTGCTGCTGTAGATCTCCATGGTCCGACGCAGTGCCTGCTG 4127970 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 ||| || ||| | || |||||||||||| || || | |||||||| | || |||| Sbjct 4127971 GGCACCCTCCGTCATGCTGTCGGCCTCGTCCAGAATTACAATCTTGTGCCTGCCCCGCGG 4128030 Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111 || ||| ||| | || ||||| | ||||| || || || | || || Sbjct 4128031 CAATGTCACCTTTTGCTGAGCAAACATCTTGATCTTGTTGCGGACCACATCGATTCCTCG 4128090 Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCG 333171 || | || || || || ||||| || ||||| | | | | |||| || | | Sbjct 4128091 TTCATTGGAGGCATTCAGCTCGAGGACAGCCTCCTTGTAGCTGTCTCCCAGAAGAATTCT 4128150 Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 || || ||| |||| | || ||||||||| ||| || |||||| Sbjct 4128151 AGCAAGACACTGGATGGTGGTTGTCTTGCCCACGCCTGGAGGACCC 4128196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176390367974422