Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 210 3e-48
seq1556 89.7 7e-12
>seq1557
Length=14215200
Score = 210 bits (232), Expect = 3e-48
Identities = 365/523 (70%), Gaps = 21/523 (4%)
Strand=Plus/Minus
Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--A 1455853
|||| ||||| || || ||||||| ||||||||| || | | | || || || |
Sbjct 5422487 AGGCTGAGGCTTCTTTCTGGACCGTCGAGGAGGTGGATTT----GTC--CAAGGACCTTA 5422434
Query 1455854 CTGGGTGTCGC----TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909
||| || | | ||| ||||||||||||||||||||| |||||| || ||||| |
Sbjct 5422433 CTGACTGGCACCGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCT 5422374
Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969
| ||||||| ||||||||||| ||||||||||| | ||||| | | |||||
Sbjct 5422373 T-CGCCGCCTCTGATGGCATCGTAAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTG 5422315
Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029
|| | | |||||||| | || ||||| |||||||||||||| || ||| | |||||
Sbjct 5422314 CAGATCACGGAGGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCG 5422255
Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089
|| | ||| | |||||||||| ||| || ||| || | || || ||||
Sbjct 5422254 GAGATGTACAGTGTTTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTG 5422195
Query 1456090 TTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGG 1456149
|| ||| ||||| ||| ||||| | |||| | ||||| |||||||| || |||
Sbjct 5422194 TTCAACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGG 5422135
Query 1456150 A--TCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGA 1456206
| ||| | | | |||| | || | ||||| || ||| |||||||| ||| ||
Sbjct 5422134 ATCTCATCCAAGTCGGCC----AATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGA 5422079
Query 1456207 GGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCAT 1456266
|||||| || ||| ||||| ||| | |||| || ||||| ||||||||||| || ||
Sbjct 5422078 GGGCATTTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGAT 5422019
Query 1456267 GCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309
||| || || ||| |||||| | ||| |||||||||
Sbjct 5422018 GCCTGG-ATTGACCTTCTCCAACGAGCTGATCTCTCGCGACGA 5421977
Score = 89.7 bits (98), Expect = 7e-12
Identities = 156/222 (70%), Gaps = 5/222 (2%)
Strand=Plus/Minus
Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580
|||||||| ||| || || | || ||| | ||||| ||| ||| | ||||| ||
Sbjct 5421902 AGATCATCCGCGACGCGGTGGCCATAGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTCA 5421843
Query 1456581 CGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639
| ||||||||||| || ||| | |||| |||||||||||| || || || ||||
Sbjct 5421842 ATTTGATCGGCATGAATTGCGACC--TGATGTCCCAGTACATTGAGTTC-GTAGCGGACC 5421786
Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699
| |||||| || | | ||| ||| ||| |||| || ||||| || |
Sbjct 5421785 GTTTGCTCGTGGAGTTGGGCGTTGGA-AAGATCTACAACACCAAAAACCCATTTAACTTC 5421727
Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741
|||||| |||| ||||| || || ||||||||||||||||||
Sbjct 5421726 ATGGAGATGATATCGCTGGACGGAAAGACCAACTTTTTCGAG 5421685
>seq1556
Length=7591821
Score = 89.7 bits (98), Expect = 7e-12
Identities = 229/346 (66%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931
|| || || ||||| || ||| ||| | | ||| |||| | || || | |||||||
Sbjct 4127852 AATCGTAGCATGGCGCAGCGGGACTGGATAGGCTCTATGATC-TTCTCGCTGGTGTTGCA 4127910
Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991
|||||||||||| || || || || | | | ||||||||| || || ||||| ||
Sbjct 4127911 GGCCAGGGCAAAACGAGTGGTGCTGCTGTAGATCTCCATGGTCCGACGCAGTGCCTGCTG 4127970
Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051
||| || ||| | || |||||||||||| || || | |||||||| | || ||||
Sbjct 4127971 GGCACCCTCCGTCATGCTGTCGGCCTCGTCCAGAATTACAATCTTGTGCCTGCCCCGCGG 4128030
Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111
|| ||| ||| | || ||||| | ||||| || || || | || ||
Sbjct 4128031 CAATGTCACCTTTTGCTGAGCAAACATCTTGATCTTGTTGCGGACCACATCGATTCCTCG 4128090
Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCG 333171
|| | || || || || ||||| || ||||| | | | | |||| || | |
Sbjct 4128091 TTCATTGGAGGCATTCAGCTCGAGGACAGCCTCCTTGTAGCTGTCTCCCAGAAGAATTCT 4128150
Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217
|| || ||| |||| | || ||||||||| ||| || ||||||
Sbjct 4128151 AGCAAGACACTGGATGGTGGTTGTCTTGCCCACGCCTGGAGGACCC 4128196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7176390367974422
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |