Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1555 334 1e-86 seq1557 127 3e-24 >seq1555 Length=7220098 Score = 334 bits (370), Expect = 1e-86 Identities = 1191/1846 (65%), Gaps = 28/1846 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || |||||||||| | || || || || || ||||||||||| |||||||| ||| Sbjct 5750480 GTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTAAGA 5750539 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 ||| |||| ||| || || || || || || ||| |||| ||||| | | Sbjct 5750540 CCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGGCCACA 5750599 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || || || | ||| ||||| ||||| ||||| || || | ||| || |||||||| || Sbjct 5750600 TGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTAATC 5750659 Query 68554 ATACTCTTT--TGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG-- 68609 | ||| |||| |||||||| | |||||| | | | | | | ||||| Sbjct 5750660 GTGGACTTGACTGAG--ATTTCCCACACCGTCTTATACAGATCTCGCACCT--TCTGGGG 5750715 Query 68610 -AAGG-CTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATC 68666 | || ||| | |||||||| ||||| | |||||| || ||||| || || || Sbjct 5750716 GATGGTCTCAATGTTTTGAATCGATCCCCTGCTGGATATGATCTGGTTCTTCATGTCGTC 5750775 Query 68667 ATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTC 68726 | |||||| | ||| |||| | | | | ||| | || || | || ||||| Sbjct 5750776 GTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAATTC 5750835 Query 68727 CCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATT 68786 || || | |||| || ||||| || || |||| || || || | |||||||| || Sbjct 5750836 GCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGCTCGAAGGATTCATTGTT 5750895 Query 68787 TCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAG 68846 |||| || ||||| || |||||||| ||||| || || || | | || | | Sbjct 5750896 GCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACGAGCAGGGAGTTCCGGAC 5750955 Query 68847 ACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAAC 68906 ||| || | | || || || | | | ||| ||||| || | | ||| || Sbjct 5750956 ACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTT 5751015 Query 68907 ATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATA 68966 | ||| | ||||| || | |||||| || || | || | || ||||| || Sbjct 5751016 GTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTA 5751075 Query 68967 AGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTC 69026 | ||||| | || ||||| || || || || || || || || ||||| ||||| Sbjct 5751076 TGCACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTC 5751135 Query 69027 GAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAAT 69086 ||| |||| || ||| | | |||||| || ||| | || || | | ||||| Sbjct 5751136 GAATATCTGCTGATTCAAAAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAAT 5751195 Query 69087 AAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACT 69146 || ||||| || |||||||||| ||||| || | || | || ||| ||| || || Sbjct 5751196 CAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGA-CT 5751254 Query 69147 TTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTA 69205 | | || || || | |||||||| || ||||| || || || || |||||| | | Sbjct 5751255 TCCTTGCCTCCGGCAGGGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAA 5751314 Query 69206 CTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA-----TAACAAA 69260 ||| || || ||||| || || ||||||| | |||| ||| | || || Sbjct 5751315 CTATCTTGGTGACTTCCTTGAGCTTCTTAAAATCATA-CGTCT-TCTCCGGCGTGACGAA 5751372 Query 69261 CATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTG 69320 ||| || || || | || || | || || ||||| | ||||| | | ||||| Sbjct 5751373 CATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTC 5751432 Query 69321 TATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTT 69380 | || || || || | || || || ||||| || |||| ||| ||||| || ||||| Sbjct 5751433 AACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTT 5751492 Query 69381 TTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGAT 69440 |||| || ||||||||| | || || ||||| | || || || | || | || || Sbjct 5751493 CCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAAT 5751552 Query 69441 AATAGATTTCCAAACGACCCTAGCATTTATTACGGTC--TTGTAACGCTTCTCTTTTTCA 69498 || | ||| | | ||| || | || || ||| || ||||| || Sbjct 5751553 GATGGCAAACCACAGGGATTGAGCCTTAAC--CGTTCGGTTGGCCCGACCCTCTTGCTCG 5751610 Query 69499 TATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCA 69558 |||| || ||| |||||||||||| ||||| || || | | |||||||| | Sbjct 5751611 TATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTG 5751670 Query 69559 TTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGA 69618 | || ||||| | ||||| || | | ||| ||| |||||||| || |||||||| Sbjct 5751671 TGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGT 5751730 Query 69619 ATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttA 69678 ||||| || || ||| ||||| | | | ||| ||||| || || || || || || Sbjct 5751731 ATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTC 5751790 Query 69679 AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCC 69738 || || || ||||| | | ||| || ||||| ||||| | ||| || || | | | || Sbjct 5751791 AGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACCG 5751850 Query 69739 GGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATC 69798 || || || ||||||||||| | || | || ||||| |||| |||||||| Sbjct 5751851 GGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCATG 5751910 Query 69799 GGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAAT- 69857 |||| | ||||| || |||||||||| || |||| | | || |||| ||||| Sbjct 5751911 GGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATG 5751970 Query 69858 -ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCA 69916 | | | | | || || || || || || || ||||| | || || ||| || Sbjct 5751971 CAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCA 5752028 Query 69917 ATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACA 69976 | | | || ||||| ||| || || ||||| | ||||| ||||| |||| Sbjct 5752029 CAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACA 5752088 Query 69977 TTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTT 70036 || | | | || | || ||| | ||| || ||||| || ||||| | | Sbjct 5752089 ACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGTGAAGTAGCGCT 5752148 Query 70037 CAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCG 70096 | || || ||||| || ||||| | || | || |||||| ||| ||||| |||| Sbjct 5752149 CCGACAGAAGATTATAGGTTTCCACGGCCGCATCGATATCCTCTCCATGGATTCCGATCG 5752208 Query 70097 CGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGT 70156 | || ||||||| ||||||||| ||||| ||| | | || ||| | || | || | Sbjct 5752209 CAACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTCTTGAGAAGAT 5752268 Query 70157 ATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 | || ||||| || || || ||||||||||| || |||||| Sbjct 5752269 AGGAACGCTCCAGCGTCTTGAAGCCAAAATAGTTATAGCCAAAGTC 5752314 >seq1557 Length=14215200 Score = 127 bits (140), Expect = 3e-24 Identities = 454/703 (65%), Gaps = 9/703 (1%) Strand=Plus/Plus Query 39347 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTA 39406 ||||||||||| || || || || |||| ||||| | |||||||| | ||| || || Sbjct 5421683 TTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCATCTCCATGAAGTTAAATGGGTTT 5421742 Query 39407 GTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCT 39466 | | || || | ||| || || || || | ||| | || || || || || Sbjct 5421743 TTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGGTCCGCTACGAACTCA 5421802 Query 39467 ATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTT 39526 ||||| ||||| || |||||||| || || | || || || || || || || Sbjct 5421803 ATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTGACGGGCAGGGCATCGGTG 5421862 Query 39527 AGAAACTCTTTTTCGATGTCTACGGC--CTCTGTTATTATCGATGTTACTACCTCATCAC 39584 || ||||| | || ||| | || || | | | | | |||||| | | ||| Sbjct 5421863 AGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTCGATGATGC--GCTCGCGCT 5421920 Query 39585 TCGGTGGATGCAATAAATGTTTAAACATTAAGCA-GGCGAAGTCACAATGTAGGCCCTCA 39643 | ||| | |||| | || | |||| | |||| ||| ||||| || || | |||||| Sbjct 5421921 TGGGTCGCTGCACCAGGTGCTGGAACA-TCAGCACGGCAAAGTCGCAGTGCAAGCCCTCG 5421979 Query 39644 TCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGC 39703 || | | || | ||||| || || || | ||||||||| ||||| ||||| || ||| Sbjct 5421980 TCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTTCTTAAGC 5422039 Query 39704 CAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACA 39763 || || |||| || || || ||||| ||||| || || || ||||| || | Sbjct 5422040 CAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCCCTCCACGGCGGCAAAGGCGATG 5422099 Query 39764 AGTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCACTTCTGTGCCCAATCAGCTTTC 39820 | | ||| ||| || | | || ||| ||||| | | ||||| || || || Sbjct 5422100 ATGCGCTCCCCGAAATTGGCCGACTTGGATGAGATCCAGGACAGGGCCCAGTCTGCCTTG 5422159 Query 39821 TTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCT 39880 ||| ||| ||||| ||||| ||||| || || || || | | | | ||| Sbjct 5422160 CGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCTCGCTGGTGTGGATCC 5422219 Query 39881 TTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATC 39940 | || || || || || | ||| ||||| || || || | ||| || || || ||| Sbjct 5422220 CGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATC 5422279 Query 39941 TGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCC 40000 || || ||||| || |||| ||| || || || || ||||| || || | ||| || Sbjct 5422280 TGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGAAGCGCTCCACC 5422339 Query 40001 AAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | || || || || || |||||| ||||| || || |||| Sbjct 5422340 AGGTTCTCGTTTACGATGCCATCAGAGGCGGCGAAGAAGGCCA 5422382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686782314330840