Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 334 1e-86
seq1557 127 3e-24
>seq1555
Length=7220098
Score = 334 bits (370), Expect = 1e-86
Identities = 1191/1846 (65%), Gaps = 28/1846 (2%)
Strand=Plus/Plus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
|| |||||||||| | || || || || || ||||||||||| |||||||| |||
Sbjct 5750480 GTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTAAGA 5750539
Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493
||| |||| ||| || || || || || || ||| |||| ||||| | |
Sbjct 5750540 CCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGGCCACA 5750599
Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553
|| || || | ||| ||||| ||||| ||||| || || | ||| || |||||||| ||
Sbjct 5750600 TGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTAATC 5750659
Query 68554 ATACTCTTT--TGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG-- 68609
| ||| |||| |||||||| | |||||| | | | | | | |||||
Sbjct 5750660 GTGGACTTGACTGAG--ATTTCCCACACCGTCTTATACAGATCTCGCACCT--TCTGGGG 5750715
Query 68610 -AAGG-CTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATC 68666
| || ||| | |||||||| ||||| | |||||| || ||||| || || ||
Sbjct 5750716 GATGGTCTCAATGTTTTGAATCGATCCCCTGCTGGATATGATCTGGTTCTTCATGTCGTC 5750775
Query 68667 ATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTC 68726
| |||||| | ||| |||| | | | | ||| | || || | || |||||
Sbjct 5750776 GTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAATTC 5750835
Query 68727 CCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATT 68786
|| || | |||| || ||||| || || |||| || || || | |||||||| ||
Sbjct 5750836 GCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGCTCGAAGGATTCATTGTT 5750895
Query 68787 TCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAG 68846
|||| || ||||| || |||||||| ||||| || || || | | || | |
Sbjct 5750896 GCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACGAGCAGGGAGTTCCGGAC 5750955
Query 68847 ACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAAC 68906
||| || | | || || || | | | ||| ||||| || | | ||| ||
Sbjct 5750956 ACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTT 5751015
Query 68907 ATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATA 68966
| ||| | ||||| || | |||||| || || | || | || ||||| ||
Sbjct 5751016 GTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTA 5751075
Query 68967 AGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTC 69026
| ||||| | || ||||| || || || || || || || || ||||| |||||
Sbjct 5751076 TGCACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTC 5751135
Query 69027 GAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAAT 69086
||| |||| || ||| | | |||||| || ||| | || || | | |||||
Sbjct 5751136 GAATATCTGCTGATTCAAAAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAAT 5751195
Query 69087 AAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACT 69146
|| ||||| || |||||||||| ||||| || | || | || ||| ||| || ||
Sbjct 5751196 CAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGA-CT 5751254
Query 69147 TTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTA 69205
| | || || || | |||||||| || ||||| || || || || |||||| | |
Sbjct 5751255 TCCTTGCCTCCGGCAGGGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAA 5751314
Query 69206 CTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA-----TAACAAA 69260
||| || || ||||| || || ||||||| | |||| ||| | || ||
Sbjct 5751315 CTATCTTGGTGACTTCCTTGAGCTTCTTAAAATCATA-CGTCT-TCTCCGGCGTGACGAA 5751372
Query 69261 CATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTG 69320
||| || || || | || || | || || ||||| | ||||| | | |||||
Sbjct 5751373 CATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTC 5751432
Query 69321 TATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTT 69380
| || || || || | || || || ||||| || |||| ||| ||||| || |||||
Sbjct 5751433 AACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTT 5751492
Query 69381 TTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGAT 69440
|||| || ||||||||| | || || ||||| | || || || | || | || ||
Sbjct 5751493 CCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAAT 5751552
Query 69441 AATAGATTTCCAAACGACCCTAGCATTTATTACGGTC--TTGTAACGCTTCTCTTTTTCA 69498
|| | ||| | | ||| || | || || ||| || ||||| ||
Sbjct 5751553 GATGGCAAACCACAGGGATTGAGCCTTAAC--CGTTCGGTTGGCCCGACCCTCTTGCTCG 5751610
Query 69499 TATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCA 69558
|||| || ||| |||||||||||| ||||| || || | | |||||||| |
Sbjct 5751611 TATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTG 5751670
Query 69559 TTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGA 69618
| || ||||| | ||||| || | | ||| ||| |||||||| || ||||||||
Sbjct 5751671 TGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGT 5751730
Query 69619 ATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttA 69678
||||| || || ||| ||||| | | | ||| ||||| || || || || || ||
Sbjct 5751731 ATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTC 5751790
Query 69679 AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCC 69738
|| || || ||||| | | ||| || ||||| ||||| | ||| || || | | | ||
Sbjct 5751791 AGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACCG 5751850
Query 69739 GGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATC 69798
|| || || ||||||||||| | || | || ||||| |||| ||||||||
Sbjct 5751851 GGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCATG 5751910
Query 69799 GGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAAT- 69857
|||| | ||||| || |||||||||| || |||| | | || |||| |||||
Sbjct 5751911 GGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATG 5751970
Query 69858 -ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCA 69916
| | | | | || || || || || || || ||||| | || || ||| ||
Sbjct 5751971 CAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCA 5752028
Query 69917 ATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACA 69976
| | | || ||||| ||| || || ||||| | ||||| ||||| ||||
Sbjct 5752029 CAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACA 5752088
Query 69977 TTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTT 70036
|| | | | || | || ||| | ||| || ||||| || ||||| | |
Sbjct 5752089 ACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGTGAAGTAGCGCT 5752148
Query 70037 CAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCG 70096
| || || ||||| || ||||| | || | || |||||| ||| ||||| ||||
Sbjct 5752149 CCGACAGAAGATTATAGGTTTCCACGGCCGCATCGATATCCTCTCCATGGATTCCGATCG 5752208
Query 70097 CGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGT 70156
| || ||||||| ||||||||| ||||| ||| | | || ||| | || | || |
Sbjct 5752209 CAACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTCTTGAGAAGAT 5752268
Query 70157 ATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202
| || ||||| || || || ||||||||||| || ||||||
Sbjct 5752269 AGGAACGCTCCAGCGTCTTGAAGCCAAAATAGTTATAGCCAAAGTC 5752314
>seq1557
Length=14215200
Score = 127 bits (140), Expect = 3e-24
Identities = 454/703 (65%), Gaps = 9/703 (1%)
Strand=Plus/Plus
Query 39347 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTA 39406
||||||||||| || || || || |||| ||||| | |||||||| | ||| || ||
Sbjct 5421683 TTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCATCTCCATGAAGTTAAATGGGTTT 5421742
Query 39407 GTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCT 39466
| | || || | ||| || || || || | ||| | || || || || ||
Sbjct 5421743 TTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGGTCCGCTACGAACTCA 5421802
Query 39467 ATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTT 39526
||||| ||||| || |||||||| || || | || || || || || || ||
Sbjct 5421803 ATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTGACGGGCAGGGCATCGGTG 5421862
Query 39527 AGAAACTCTTTTTCGATGTCTACGGC--CTCTGTTATTATCGATGTTACTACCTCATCAC 39584
|| ||||| | || ||| | || || | | | | | |||||| | | |||
Sbjct 5421863 AGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTCGATGATGC--GCTCGCGCT 5421920
Query 39585 TCGGTGGATGCAATAAATGTTTAAACATTAAGCA-GGCGAAGTCACAATGTAGGCCCTCA 39643
| ||| | |||| | || | |||| | |||| ||| ||||| || || | ||||||
Sbjct 5421921 TGGGTCGCTGCACCAGGTGCTGGAACA-TCAGCACGGCAAAGTCGCAGTGCAAGCCCTCG 5421979
Query 39644 TCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGC 39703
|| | | || | ||||| || || || | ||||||||| ||||| ||||| || |||
Sbjct 5421980 TCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTTCTTAAGC 5422039
Query 39704 CAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACA 39763
|| || |||| || || || ||||| ||||| || || || ||||| || |
Sbjct 5422040 CAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCCCTCCACGGCGGCAAAGGCGATG 5422099
Query 39764 AGTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCACTTCTGTGCCCAATCAGCTTTC 39820
| | ||| ||| || | | || ||| ||||| | | ||||| || || ||
Sbjct 5422100 ATGCGCTCCCCGAAATTGGCCGACTTGGATGAGATCCAGGACAGGGCCCAGTCTGCCTTG 5422159
Query 39821 TTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCT 39880
||| ||| ||||| ||||| ||||| || || || || | | | | |||
Sbjct 5422160 CGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCTCGCTGGTGTGGATCC 5422219
Query 39881 TTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATC 39940
| || || || || || | ||| ||||| || || || | ||| || || || |||
Sbjct 5422220 CGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATC 5422279
Query 39941 TGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCC 40000
|| || ||||| || |||| ||| || || || || ||||| || || | ||| ||
Sbjct 5422280 TGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGAAGCGCTCCACC 5422339
Query 40001 AAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043
| || || || || || |||||| ||||| || || ||||
Sbjct 5422340 AGGTTCTCGTTTACGATGCCATCAGAGGCGGCGAAGAAGGCCA 5422382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686782314330840
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