Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1553 123 2e-23 seq1557 122 7e-23 seq1558 82.4 6e-11 >seq1553 Length=5866729 Score = 123 bits (136), Expect = 2e-23 Identities = 278/418 (67%), Gaps = 6/418 (1%) Strand=Plus/Minus Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 |||||| || || ||| || ||||| || |||| | | |||||| |||| || Sbjct 1124903 CCGACGCATCATCATGTCGGCTTGGAATCCGCTGGACATCCCAAAGATGGCCCTGCCGCC 1124844 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAAT------GGTGAACTGTCATGTCAATT 41116 || || | || ||||||||||| | | | ||||| ||||| || || | Sbjct 1124843 GTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCGGTGAGCTGTCGTGCCAGCT 1124784 Query 41117 GTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCT 41176 ||| || ||| | |||||||| || || || || |||||||| || || || || Sbjct 1124783 GTACCAGAGAAGCGCCGACATGGGCCTGGGCGTACCCTTTAACATCGCCTCCTACGCCCT 1124724 Query 41177 GCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTT 41236 |||||| | |||||||| || || || | | || || || || ||||||||||| | Sbjct 1124723 GCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGCCGGGCGACTTTGTTCACACCAT 1124664 Query 41237 AGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAA 41296 || ||| ||| | ||| | || ||| |||||||| | | || |||||| || | Sbjct 1124663 GGGCGATACACACGTCTACCTGAACCACGTAGAGCCGCTGAAGGAGCAACTGCAGCGCAC 1124604 Query 41297 ACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTG 41356 ||| |||| ||||| | ||| | |||||||| || | |||| || || || | Sbjct 1124603 ACCGCGACCCTTTCCCAAGCTGATCATTAAACGTCAGGTGCAGGACATCGAGGACTTCCG 1124544 Query 41357 CATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATG 41414 | |||| || |||| | ||| |||||||| | || || ||| | ||||| ||| Sbjct 1124543 CTTCGAAGACTTTGAAATAGTCGACTACAATCCACATCCAAAGATCAAAATGGAGATG 1124486 >seq1557 Length=14215200 Score = 122 bits (134), Expect = 7e-23 Identities = 241/353 (68%), Gaps = 9/353 (3%) Strand=Plus/Minus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 || |||||||| || || || || || || ||||| || || | || ||||| |||||| Sbjct 5422305 GAGGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTAC 5422246 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTAAT 44047 ||| || |||| || || |||||| ||| ||| || || | | |||| || Sbjct 5422245 AGTGTTTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACC---TGTTCAAC 5422189 Query 44048 GCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA-A 44106 || || ||||| | || || | || | || |||||||||||||| ||||| | Sbjct 5422188 GCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCA 5422129 Query 44107 TTCAAATGATTC--TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTC 44164 | ||| | | ||| || || || | |||| ||||| | ||||| ||||||||| Sbjct 5422128 TCCAAGTCGGCCAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATTTTC 5422069 Query 44165 TTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTG 44224 || || || || |||| || ||| | ||||| || ||| |||||||||| ||| Sbjct 5422068 TTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTG 5422009 Query 44225 ACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 || || || || ||| | || ||| || || ||||| || ||||| ||||| Sbjct 5422008 ACCTTCTCCAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGC 5421956 >seq1558 Length=21120651 Score = 82.4 bits (90), Expect = 6e-11 Identities = 328/509 (64%), Gaps = 12/509 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || ||||| || | ||| | | || || || ||| |||| |||| ||| Sbjct 12346541 CCCAAGATCGTGAATGGACCGCAGATCCTGGACAAGTACGTGGGTGAATCAGAAGCCAAT 12346600 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || || ||||||| || || || || || |||| || || || | || ||| Sbjct 12346601 ATCCGGCGACTGTTTGCCGAGGCCGAGGAGGAGGAAAAGCGCTTGGGACCGAACAGTGGA 12346660 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT- 19605 ||||||| || || | || || | ||||| || || ||| | || || ||| Sbjct 12346661 CTGCACATCATCATCTTCGACGAGATCGACGCCATTTGCAAGGCTCGCGGATCCGTGGCC 12346720 Query 19606 -GTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||| ||| || || ||||| || ||||||||||| || | || | ||||| || Sbjct 12346721 GGTAATAGTGGTGTCCACGACACGGTCGTCAATCAACTGCTAGCCAAGATCGACGGCGTG 12346780 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||| || || | || || || ||||| || | | || | || || Sbjct 12346781 GAGCAGTTGAACAACATCCTGGTGATAGGAATGACCAACCGGCGCGACATGATCGATGAG 12346840 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 ||| | | ||||| || || |||||| | | || || || | ||| ||| | || Sbjct 12346841 GCCCTGCTGCGACCTGGACGCTTGGAAGTGCAAATGGAGATCAGCTTGCCCAAGGAGCAG 12346900 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840 || || || | || | ||||| | ||| ||| | |||||| | |||| || Sbjct 12346901 GGTCGCGTCCAGATCCTGAACATCC--ACACCAAGCGTATGCGAGACTTTAACAAGATAG 12346958 Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899 | ||||||| || | | || || || || || || || |||| || |||||||| Sbjct 12346959 CTAACGATGTGGA-CAACAATGAGATCGCGGCTAGGACAAAGAACTTCAGTGGCGCAGAG 12347017 Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATC 19928 | ||||| | || || || |||||||| Sbjct 12347018 TTGGAGGGCCTGGTTAGAGCGGCCCAATC 12347046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397384643109655