Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1555 268 8e-67 seq1556 102 7e-17 >seq1555 Length=7220098 Score = 268 bits (296), Expect = 8e-67 Identities = 1009/1569 (64%), Gaps = 43/1569 (3%) Strand=Plus/Plus Query 130412 ACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTTTTG 130471 |||||||| ||||||||||| | || ||||||||||||| ||| ||||| || ||||| Sbjct 5750477 ACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTA 5750536 Query 130472 AGTCCAATTTTGTGTCCA----TAATTGTGGATGCTGCACATTGTTTGGTAATTGGGTTG 130527 || || ||| ||| ||| ||| ||| || || || || || | Sbjct 5750537 AGACCTGCTTT----CCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTC 5750592 Query 130528 CGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCAT 130587 ||||| |||||||| ||| || ||||| || || || || | || || ||||| Sbjct 5750593 GGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCAT 5750652 Query 130588 GTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTT 130647 | | | ||| || | || ||||| | ||||| || ||||| | | | | Sbjct 5750653 TTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTATACAGATCTCGCACCTTCTG 5750712 Query 130648 GGGTATGCGCGCAATCGATTGAA-CGCTACCGTTGTTGGCTATAATTTCGTTGCGCATAC 130706 ||| ||| | |||| ||||| || | || | | ||| ||| || | ||| ||| Sbjct 5750713 GGGGATGGTCTCAATGTTTTGAATCGATCCCCT-GCTGGATATGATCTGGTTCTTCATGT 5750771 Query 130707 TTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAA 130766 | || |||| | |||| || || | |||||||| || | | || | Sbjct 5750772 CGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGA 5750831 Query 130767 AATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGT 130826 | || || | ||| || || | ||| ||||| | ||| | || || |||||||| | Sbjct 5750832 ATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGCTCGAAGGATTCAT 5750891 Query 130827 TGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTAC 130886 ||||||| | ||| || || |||| ||| ||||||||| || || | || || || | Sbjct 5750892 TGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACGAGCAGGGAGTTCC 5750951 Query 130887 GAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTT 130946 | | ||||||| || | || |||||||| | ||| ||||| || || ||| Sbjct 5750952 GGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAG----GTTCGTT 5751007 Query 130947 TG-ACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAAC 131005 | || |||| |||||| || | || | || ||||| || | || ||| ||| | Sbjct 5751008 GGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAG 5751067 Query 131006 GATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAA 131065 | |||||| |||||| | ||||| ||| ||| |||||||| || || || ||| Sbjct 5751068 GTTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAA 5751127 Query 131066 ATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTC 131125 ||||||||| || || | ||| || | |||| | ||| ||||| || || | Sbjct 5751128 ATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCTTCGCTTTCGTACGGGAAACGC 5751187 Query 131126 ATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAA 131185 || | ||| || || || |||| ||||| || |||| |||||| || | || | ||| Sbjct 5751188 ATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAAA 5751247 Query 131186 TTACATTTACGCGAACATTCGG--TGGGATAAAGGTTAATGTCAATTATTTTGTTTAAAT 131243 || | || | | | | ||| ||||||| ||| || |||||||| ||||||| || Sbjct 5751248 TTGGACTTCCTTG--CCTCCGGCAGGGGATAATAGTTGATATCAATTATCTTGTTTAGAT 5751305 Query 131244 TGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGA 131303 | || || | ||||| || | || | |||||| |||| | || Sbjct 5751306 TTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTAAAATCATACGT---CTTCTCCG 5751362 Query 131304 GGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAAT 131363 | | || || || | || || |||| || || ||||| | || || Sbjct 5751363 GCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTG 5751422 Query 131364 CGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTT 131423 | |||| | ||| ||||| | |||||| || |||| ||| |||||||||| ||| || | Sbjct 5751423 AGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCT 5751482 Query 131424 GATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTT 131483 | ||||| || || | ||||||| | | |||||| || | || || || |||| Sbjct 5751483 GGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTT 5751542 Query 131484 GAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCC 131541 | | ||||| ||| | | | || | || |||| || | || |||||| Sbjct 5751543 GCGCCTCAATGATGGCAAACCACAGGGATT--GAGC-----CTTAACCGTTCGGTTGGCC 5751595 Query 131542 ---GCGTTTT--TCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACT--GT 131594 | | || ||||| || ||||||| | |||| || | | ||| || ||| || Sbjct 5751596 CGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCAC--ACTTCGT 5751653 Query 131595 CCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCT 131654 | | ||||| | | ||| ||||| |||||||| | ||||| ||||| || | Sbjct 5751654 GGAGACCAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTT 5751713 Query 131655 TCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTG 131714 |||| || | ||| || | ||| | ||||| |||||||| | || ||||||||| Sbjct 5751714 TCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTT 5751773 Query 131715 TACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAAT 131774 | ||| | | || |||| | | || || || | |||| |||||||||||||||| Sbjct 5751774 TGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAAT 5751833 Query 131775 ACACTGCCATTGCGCCTTTGCGCTTACCGCCT---TGATTAACATGACGAACCATGTTGT 131831 | | || | || || ||||| |||||| |||| |||| ||| ||| || | Sbjct 5751834 AAATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTAT 5751893 Query 131832 TGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGC 131891 || | || | || |||||| |||| || |||| | ||||| |||| ||| || Sbjct 5751894 TGAAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGG 5751953 Query 131892 TGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTA 131951 |||| || || | || || ||||||||||| || || ||| || | || ||||| | Sbjct 5751954 TGCCCTTTGCACGAATGCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCA 5752013 Query 131952 GTGCGCATT 131960 ||||||| Sbjct 5752014 TGGCGCATT 5752022 >seq1556 Length=7591821 Score = 102 bits (112), Expect = 7e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || ||||| ||||| ||| Sbjct 3894345 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAA 3894404 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || || ||||| |||||| | ||||||||||| ||||| || || Sbjct 3894405 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3894464 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || |||||| |||| | || | ||||| | |||| ||||| Sbjct 3894465 ATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGC-TCAAC 3894523 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || | ||| || | ||||| || || || ||||| ||||| |||||| || || Sbjct 3894524 CTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATACCTCCT 3894578 Score = 102 bits (112), Expect = 7e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || ||||| ||||| ||| Sbjct 3895029 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAA 3895088 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || || ||||| |||||| | ||||||||||| ||||| || || Sbjct 3895089 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3895148 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || |||||| |||| | || | ||||| | |||| ||||| Sbjct 3895149 ATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGC-TCAAC 3895207 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || | ||| || | ||||| || || || ||||| ||||| |||||| || || Sbjct 3895208 CTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATACCTCCT 3895262 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || || ||||| ||| | Sbjct 3893433 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3893492 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| ||||||| || || || |||||| | ||||||||||| ||||| || || Sbjct 3893493 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3893552 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| ||||| ||||| |||| | || | ||||| | |||| ||||| Sbjct 3893553 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGC-TCAAC 3893611 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | ||||| || || || ||||| ||||| |||||| Sbjct 3893612 CTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3893660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || || || || || ||||| ||| Sbjct 3892749 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAA 3892808 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| ||||||| || || || |||||| | ||||||||||| ||||| || || Sbjct 3892809 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3892868 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| ||||| ||||| |||| | || | ||||| | |||| ||||| Sbjct 3892869 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGC-TCAAC 3892927 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | ||||| || || || ||||| ||||| |||||| Sbjct 3892928 CTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3892976 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| |||| || | |||| || | || || || || || || ||||| ||| Sbjct 3894801 CCTCCACGCAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAA 3894860 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || || ||||| |||||| | ||||||||||| ||||| || || Sbjct 3894861 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3894920 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| ||||| ||||| |||| | || | ||||| | |||| ||||| Sbjct 3894921 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGC-TCAAC 3894979 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | ||||| || || || ||||| ||||| |||||| Sbjct 3894980 CTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3895028 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || || ||||| ||| | Sbjct 3892977 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3893036 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| ||||||| || || || |||||| | ||||||||||| ||||| || | Sbjct 3893037 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGAG 3893096 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| ||||| || | | || | ||||| | | ||| || Sbjct 3893097 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCGATGGTGTCCGACGGTTCTACC 3893156 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | || || |||| ||| ||||| ||||| |||||| Sbjct 3893157 TCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3893204 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || || ||||| ||| Sbjct 3894117 CCACCACGCAGTCGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAA 3894176 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || || || || |||||| | ||||||||||| ||||| || || Sbjct 3894177 AGGGTGCGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3894236 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| ||||| ||||| |||| | || | ||||| | |||| ||||| Sbjct 3894237 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGC-TCAAC 3894295 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | ||||| || || || ||||| ||||| |||||| Sbjct 3894296 CTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3894344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424858109800872