Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq10434 360 7e-95 seq5353 205 3e-48 seq7166 183 1e-41 seq14046 181 4e-41 seq5023 159 1e-34 seq10366 134 5e-27 seq3138 118 4e-22 seq3046 118 4e-22 seq12467 96.9 1e-15 seq12970 91.5 5e-14 >seq10434 Length=1952 Score = 360 bits (398), Expect = 7e-95 Identities = 308/370 (83%), Gaps = 8/370 (2%) Strand=Plus/Minus Query 22125 TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC 22184 |||||||||||||||| | || | | |||| |||| |||| |||||||||||||| Sbjct 368 TTACGCCCCGCCCTGCTCGAAAACGTACTGCTGTGGTAAATCATGAAGCATTCTGCCGAG 309 Query 22185 ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC 22244 || ||||| ||||| | |||||||||| ||||||||||||||||| |||||||||||||| Sbjct 308 ATCGAAGCGATCACGATCGGCATGATGCACCTGAATCGCCAGCGGGATCAGCACCTTGTC 249 Query 22245 GCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC 22304 || |||| |||| | |||| ||||| ||| |||||||||||||||||||| ||| ||| Sbjct 248 GCTCTGCGCATAACAGTTGCGCATGGAGAAGACGGGGGCGAAGAAGTTGTCGATAGAGGC 189 Query 22305 CACGTTTAAA-TCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAA-CATA 22362 |||||| ||| |||||||||||||||| ||| |||| |||||||||||||||| |||| Sbjct 188 CACGTTGAAACTCAAAACTGGTGAAACGAACCGAGGGGATGGCTGAGACGAAAAATCATA 129 Query 22363 TTCTCAATA-AACCCTTTAGGGAAATAGGCCAGGTTTTCACCGT-AACACGCCACATCTT 22420 ||||||||| | ||| ||||| ||||||| || | |||||||| | |||| ||||||| Sbjct 128 TTCTCAATAGATCCCGATAGGGTAATAGGCGAGCTGTTCACCGTCAGCACGGGACATCTT 69 Query 22421 GCGAATATATGTGTAGAAACTGC-CGGAAATCGTCGT-GGTATTCACTCCAGAGCGATGA 22478 ||| | |||| |||||||||||| | |||||||||| ||||||||||| ||||||| Sbjct 68 GCG-ACATATCTGTAGAAACTGCGTGCAAATCGTCGTCGGTATTCACTCGGAAGCGATG- 11 Query 22479 AAACGTTTCA 22488 | |||||||| Sbjct 10 AGACGTTTCA 1 >seq5353 Length=1321 Score = 205 bits (226), Expect = 3e-48 Identities = 288/394 (73%), Gaps = 9/394 (2%) Strand=Plus/Minus Query 22308 GTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTC 22367 ||| |||||| ||| | || |||| | || || ||||||| | | |||| ||| Sbjct 392 GTTCAAATCAGTTCTGTTCAA-CTCAGCTCCGGTCTGACTGAGACCGATCAGATATGCTC 334 Query 22368 AATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATA 22427 | | ||| ||| | | ||| |||||||||| ||| |||| |||| |||| |||||| Sbjct 333 AGTTAACACTTGATGCGTTTAGACCAGGTTTTCTCCGAAACAGGCCAGATCTAGCGAATT 274 Query 22428 TATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATG-AAAACGTTT 22486 ||| | ||||||||||| ||| || ||||| ||||| ||| | ||||| | | Sbjct 273 CTTGTCTGAAAACTGCCGGACCAACACGTTGTGTTCACACCAGATCGAGGCAAAACATGT 214 Query 22487 CAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCAC 22546 ||| ||||| ||||||||| ||||||||||||||| | ||||||||||| | ||| |||| Sbjct 213 CAGGTTGCTAATGGAAAAC-GTGTAACAAGGGTGATCCCTATCCCATATGATCAGATCAC 155 Query 22547 CGTCTTTCATTGCCATA-CGGAATTCCGGATGAGCATTCATCAGGCGGGCAAGAATGTGA 22605 || ||||| ||| |||| | ||| |||||||||||| || | | |||||| ||| ||| | Sbjct 154 CGCCTTTCCTTGACATACCCGAACTCCGGATGAGCAATCCTAACGCGGGCGAGACTGTCA 95 Query 22606 ATAAA--GGCCGGATAAAACTTGTGCTTATTTTTCT-TTACGGTCTTTAAAAAGGCCGTA 22662 | ||| | || | |||| |||||||| |||||| | | |||||||| | | || Sbjct 94 AAAAAACGCTCGAAAAAAAATTGTGCTTGATTTTCTCCTGCTCCGTTTAAAAAAGGCCTA 35 Query 22663 AT-ATCCAGCTGAACGGTC-TGGTTATAGGTACA 22694 || ||| | ||| ||| | ||| | | |||||| Sbjct 34 ATAATCAACCTGGACGAACTTGGGTCTGGGTACA 1 >seq7166 Length=1515 Score = 183 bits (202), Expect = 1e-41 Identities = 170/212 (80%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 22243 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGT-TGTCCATATT 22301 ||| | || |||||| | |||| |||| | || |||| |||| | | || || | Sbjct 210 TCGACCTGTGTATAAATCTAGCCCTCGGTGTAGACAGGGGTCAAGATATCTATCTATCT- 152 Query 22302 GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACAT 22361 |||||||| | |||||||||||| || || ||||||||||| || |||||||||| | || Sbjct 151 GGCCACGTATCAATCAAAACTGGCGATACACACCCAGGGATAGGTTGAGACGAAACATAT 92 Query 22362 ATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTG 22421 ||||||||||| |||||||| |||||||| |||| | || | ||| ||||| |||||| | Sbjct 91 ATTCTCAATAA-CCCTTTAGAGAAATAGGGCAGGATCTCTCTGTAGCACGCGACATCTAG 33 Query 22422 CGAATATATGTGTAGAAACTGCCGGAAATCGT 22453 |||| |||| |||||||||||||||||||||| Sbjct 32 CGAACATATCTGTAGAAACTGCCGGAAATCGT 1 >seq14046 Length=4148 Score = 181 bits (200), Expect = 4e-41 Identities = 253/334 (76%), Gaps = 17/334 (5%) Strand=Plus/Minus Query 22341 ATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTT-TT 22399 ||||||| || ||||||| |||| | || ||| || || ||||||| || || Sbjct 339 ATTGGCTTTCACACAAAACATGTTCTAACCAATCCCGTTCGGACAATAGGCGAGTCCGTT 280 Query 22400 CACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGT 22459 ||| || ||| ||||||||||| ||||||| | || | || | |||| | || Sbjct 279 CACGTTAGCACCGGACATCTTGCGATCGAATGTGTACAGACCGGCGCAGATCGGAGCGGG 220 Query 22460 AT-TCACTCCAGAGCGAT-GAAAACGTTTC-AGTTT-GCTCATGGAAAACGGTGTAAC-A 22514 || |||||||| |||||| || |||| || ||||| ||||||||| ||| ||| | | Sbjct 219 ATCTCACTCCACAGCGATCGAGAACGGATCCAGTTTTGCTCATGGACAACCCTGTTCCGA 160 Query 22515 AGGGTGAACACTATCCCATATCACCAGCTC-ACCGT-CTTTCATTGCCATACGGAA--TT 22570 || |||||||||||| |||||||| ||||| ||||| |||| ||||||||||||| | Sbjct 159 AGCGTGAACACTATCACATATCACGAGCTCAACCGTGTTTTCGTTGCCATACGGAACCTC 100 Query 22571 CCGGATGAGCA-TTCA-TCA-GGCGGGC-AAGAATGTGAATAAAG-GCCGGAT-AAAACT 22624 |||||||||| |||| ||| ||| ||| || |||| || ||||| |||||| |||||| Sbjct 99 TCGGATGAGCATTTCAGTCAGGGCTGGCGAACAATGCGATTAAAGTCCCGGATAAAAACT 40 Query 22625 TGTGCTTATTTT-TCTTTACGGTCTTTAAAAAGG 22657 |||||||||||| || ||| | || |||||||| Sbjct 39 TGTGCTTATTTTATCCTTAACGGCTCTAAAAAGG 6 >seq5023 Length=1287 Score = 159 bits (176), Expect = 1e-34 Identities = 183/241 (76%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 22217 GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA 22276 ||||| | ||| | ||| ||||||| |||| || ||| | ||||||||||||| Sbjct 239 GAATCTGCTGCGTCCTCAACACCTTGGCGCCATGATTATC-TGTTTGCCCATGGTGTGTT 181 Query 22277 CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCC 22336 || | |||||||| | |||||||| |||| || | || ||| || |||| | | Sbjct 180 CGAAGATGAAGAAGTCGACCATATTGTGCACGAATATGTTCAA-CTGAAGATACTCTCTC 122 Query 22337 AGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACC-CTTTAGGGAAATAGGCCAGG 22395 || ||| ||||||||||||| || | || ||||| | || |||| ||||| |||||| Sbjct 121 CGGATTTGTCTGAGACGAAAAATGTACTGTCCATAAATCGCTCTAGGCAAATATGCCAGG 62 Query 22396 TTTTCACCGTAA-CACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTC 22454 ||||||||| | |||||||||||||| || ||||| ||||| ||||||||||||||||| Sbjct 61 GTTTCACCGTGATCACGCCACATCTTGTGATTATATATGTAGTAACTGCCGGAAATCGTC 2 Query 22455 G 22455 | Sbjct 1 G 1 >seq10366 Length=1940 Score = 134 bits (148), Expect = 5e-27 Identities = 170/227 (75%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 22427 ATATGTGTAGAAACTGCCGGAAATCGTCGTGGTAT-TCACTCCAGAGCGATGAAAACGTT 22485 |||||| || || | |||| || || |||| | || |||||||| |||||| |||| Sbjct 225 ATATGTTCGGATACGGTCGGATCTCATC-TGGTCTGTCTCTCCAGAGTGATGAACGCGTT 167 Query 22486 TCAGTTTG-CTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTC 22544 | | ||| | ||||| | || || ||| ||||||| | ||||||| |||| ||| || Sbjct 166 TGATCTTGTCCCATGGTATACTGTTCAACTAGGGTGAGCTCTATCCCGGATCAGCAGATC 107 Query 22545 ACCGTCTT-TCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCGGGCAAGAATGT 22603 | ||| | || ||||||| || ||| ||||||||| | |||||| || |||| Sbjct 106 -CTGTCCTGTCTCTGCCATATAGAGCTCCAGATGAGCATGTTCCGAGCGGGCCAGGATGT 48 Query 22604 GAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTT 22650 || ||||||| ||| || ||||||||||||| ||||||||||||||| Sbjct 47 GACTAAAGGCGGGACAACACTTGTGCTTATTATTCTTTACGGTCTTT 1 >seq3138 Length=1080 Score = 118 bits (130), Expect = 4e-22 Identities = 119/151 (79%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 22337 AGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGT 22396 ||||||||||||||| | |||| | | ||| || |||||||||||| |||| Sbjct 148 AGGGATTGGCTGAGATCTATCT-ATATACCTATCGAACTCTCTAGGGAAATAGGTCAGGA 90 Query 22397 TTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGT 22456 | |||||||||||||||| |||| || || ||| | ||||||| ||||||||||| ||| Sbjct 89 TCTCACCGTAACACGCCATATCTAGC-TATCTATCTATAGAAACAGCCGGAAATCGACGT 31 Query 22457 GGTATTCACTCCAGAGCGATGAAAACGTTTC 22487 |||| || ||| ||||||||||||| || || Sbjct 30 GGTA-TCTCTCTAGAGCGATGAAAATGTATC 1 >seq3046 Length=1068 Score = 118 bits (130), Expect = 4e-22 Identities = 190/270 (70%), Gaps = 5/270 (2%) Strand=Plus/Minus Query 22320 ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTT 22379 |||||||||| | ||| ||| ||| || |||||||| |||| |||||| || Sbjct 267 ACTGGTGAAATGCTCCCTTGGAACATGTGACACTAAAAACATGTTCTGTTCAAACCCGTT 208 Query 22380 AGGG--AAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGA 22437 || ||| | | | || ||||| | ||| | || | |||||||| || | Sbjct 207 CTGGTCAAACATG--ATGTGTTCACACAAGCACTGCTCAACAAGCGAATATTTGAACATG 150 Query 22438 AACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCA 22497 ||| |||||||| ||||||||||| || |||||| ||||||| ||||| ||| Sbjct 149 TTCTGTTCGAAATCGTTCTGGTATTCACTTGTTAGGGATGAACACGTTTCGGTTTGATCA 90 Query 22498 TGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATT 22557 || ||| || ||||| ||||||| ||||| |||||||| ||||||| |||||| | Sbjct 89 TGTCAAATGGAATAACATCTGTGAACAACATCCC-TATCACCACCTCACCGGCTTTCACT 31 Query 22558 GCCATACGGAATTCCGGATGAGCATTCATC 22587 | | |||| | || |||||||||||||| Sbjct 30 GGCTTACGTCACACCTGATGAGCATTCATC 1 >seq12467 Length=2456 Score = 96.9 bits (106), Expect = 1e-15 Identities = 97/122 (80%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 22434 TAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTG 22493 ||||| ||| ||| || |||||||||| ||| |||||||||| | ||| |||||| Sbjct 127 TAGAACATGCTCGAACACGACGTGGTATTCTCTCACAAGCGATGAAAGCATTT-AGTTTG 69 Query 22494 CTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCAT-ATCACCAGCTCACCGTCTT 22552 ||||||| ||||||||| | ||||| | || | ||||||| |||||||| |||||| | | Sbjct 68 CTCATGGGAAACGGTGTGAAAAGGG-GGACCCCATCCCATAATCACCAGATCACCGCCGT 10 Query 22553 TC 22554 || Sbjct 9 TC 8 >seq12970 Length=2693 Score = 91.5 bits (100), Expect = 5e-14 Identities = 121/158 (77%), Gaps = 9/158 (6%) Strand=Plus/Minus Query 22383 GAAATAGGCCAGGTTTTCAC-CGTAACACGCCACATCTTG-CGAATATATGTGTAGAAAC 22440 ||||||||||||||| |||| ||||||| | | ||||| | | | |||||||||||| || Sbjct 158 GAAATAGGCCAGGTTCTCACACGTAACAGGTCGCATCTGGTCTAGTATATGTGTAGACAC 99 Query 22441 TGCCGG-AAATCGTCGTG--GTATTCACTCCAGAG-CGATGAAAACGTTTCAGTTTGCTC 22496 || ||| ||| ||||||| | || ||| ||| ||||| ||||| | | ||||||| Sbjct 98 TGTCGGAAAAGCGTCGTGTCGAATCATGTCCTGAGTCGATGCAAACGCTGTACTTTGCTC 39 Query 22497 ATGGAAAACGG-TGTAACAAGGGT-GAACACT-ATCCC 22531 || | ||| ||||| | |||| ||||||| ||||| Sbjct 38 TTGTGATTCGGATGTAATATGGGTCGAACACTGATCCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184412534955858