Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 194 2e-44
seq1551 129 7e-25
>seq1555
Length=7220098
Score = 194 bits (214), Expect = 2e-44
Identities = 640/987 (65%), Gaps = 15/987 (2%)
Strand=Plus/Plus
Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766
||| ||||| || ||||| || || ||| ||||||| || |||| || || || || ||
Sbjct 5750857 GTATATGTTCGTGGTGTAGGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGA 5750916
Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826
|| || ||||| || || | | || ||| || | ||| | || ||| ||| ||
Sbjct 5750917 TGCAGTGGGCATGGGAGCAACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATGGACTC 5750976
Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATGTCAAACTG 110883
||| | | |||||| | || || ||| |||||| |||||||||| ||||
Sbjct 5750977 CTTCAATTTCTGCCAGTCCCAC---AGGTTCGTTGGCACCTTGTCCCACATGTCGTACTG 5751033
Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943
| | |||| | | | || ||||| ||||||| || | ||||| || | ||
Sbjct 5751034 CAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTCGGTCTGGGC 5751093
Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003
|| ||| ||||| || |||| || | | || |||||||| || || | |||||
Sbjct 5751094 CAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTCAA 5751153
Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063
|||||| || || | | | | || | ||| || |||| |||| ||
Sbjct 5751154 AAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCC 5751213
Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGG 111123
|||| ||| | || | || | ||| | || ||| ||||| | || | | |||
Sbjct 5751214 CTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCCTCCGGCAGGGG 5751273
Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183
|||| | || | ||||| | |||||||||||||||||| ||||| |||| ||| |
Sbjct 5751274 ATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCCTT 5751333
Query 111184 AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGA 111243
|| || | | ||||| | || |||| |||| || | |||||||| ||
Sbjct 5751334 GAGCTTCTTAAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATGGA 5751390
Query 111244 TGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAA 111303
||||| ||||| || || |||||||| | || || | ||||| || || ||
Sbjct 5751391 GGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAA 5751450
Query 111304 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTT 111363
|||| | ||| || || |||| ||||| ||||| |||||| ||||||| || |||||
Sbjct 5751451 GTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTT 5751510
Query 111364 GTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA--CA 111421
| |||||||||| || | || |||||| || | | | || || ||| | |
Sbjct 5751511 GAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGA 5751570
Query 111422 TCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCT 111481
| | || || | ||||||||| ||||| |||||| || ||| || |
Sbjct 5751571 TTG--AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTT 5751628
Query 111482 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 111541
|| || || || ||| | | ||| |||||| || ||||| || || | || |||
Sbjct 5751629 TCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCGAC 5751688
Query 111542 CATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 111601
|| | ||| ||||||| || |||||||| || || || |||||||||| ||||
Sbjct 5751689 CAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAAC 5751748
Query 111602 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCAT 111660
||||| | ||| |||||| | || ||| || | | || |||||||| |
Sbjct 5751749 AGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTT-CTTCTTCAGTTCCAGGAACTCAAA 5751807
Query 111661 GATATCCGCGTGCCATGGCTCAAGATA 111687
|| ||||| |||||| || || | |||
Sbjct 5751808 GACATCCGAGTGCCAGGGTTCCAAATA 5751834
>seq1551
Length=3727775
Score = 129 bits (142), Expect = 7e-25
Identities = 188/263 (71%), Gaps = 2/263 (1%)
Strand=Plus/Plus
Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865
||||| || ||| | | || |||||||||||||| | ||||||||| || |||||||||
Sbjct 3065295 TCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTTG 3065354
Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924
|| | ||| | | | | ||||| || ||||| || ||| || ||||| || || ||
Sbjct 3065355 TTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTCC 3065413
Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984
||||||||| || ||| | ||||| || || | | | ||| |||||||||| |||
Sbjct 3065414 GTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCACG 3065473
Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044
||| ||| | | ||| |||| ||||||| |||| ||| ||||| | |||||
Sbjct 3065474 CTTGTCATTCCTTTTGAAACAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCCATC 3065533
Query 182045 CGCCATATGGGCAATAGAGCGCT 182067
| ||| | | ||| |||||||
Sbjct 3065534 CACCAGACTAGGAATGGAGCGCT 3065556
Score = 91.5 bits (100), Expect = 2e-13
Identities = 144/203 (71%), Gaps = 5/203 (2%)
Strand=Plus/Plus
Query 182675 AGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACC 182734
||| ||||| ||||| | |||||| | ||| |||||||| ||||||||||| || ||
Sbjct 3066203 AGCTTCCCGCACATTTAGAAGTTTACCCCTAAGCGGGAACACGCCGTAGTGATCTCGTCC 3066262
Query 182735 AACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAG 182794
| || ||||| | || || | | || || || || |||||||||| |||||
Sbjct 3066263 GATCACGCCCAGACCAGATACGGCTAATGACTTGGCTGAGTCTCCCTCCGTGAGGATGAG 3066322
Query 182795 AGTACACTTTCCAGA-TTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATAC 182853
|| || || ||| || | | |||||||| ||| ||||| |||| ||||||||| |
Sbjct 3066323 GGTGCAATTAATAGAGTTCTTTC-CACCCGCCTCGTTAGCGTCTTCCAGCTTGGGAATGC 3066381
Query 182854 CGGTAATTTTG---GACTTGCGA 182873
| | || ||| |||||||||
Sbjct 3066382 CCTTGATCTTGCTTGACTTGCGA 3066404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627916355757600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |