Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1555 194 2e-44 seq1551 129 7e-25 >seq1555 Length=7220098 Score = 194 bits (214), Expect = 2e-44 Identities = 640/987 (65%), Gaps = 15/987 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| || ||||| || || ||| ||||||| || |||| || || || || || Sbjct 5750857 GTATATGTTCGTGGTGTAGGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGA 5750916 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || || | | || ||| || | ||| | || ||| ||| || Sbjct 5750917 TGCAGTGGGCATGGGAGCAACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATGGACTC 5750976 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATGTCAAACTG 110883 ||| | | |||||| | || || ||| |||||| |||||||||| |||| Sbjct 5750977 CTTCAATTTCTGCCAGTCCCAC---AGGTTCGTTGGCACCTTGTCCCACATGTCGTACTG 5751033 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 | | |||| | | | || ||||| ||||||| || | ||||| || | || Sbjct 5751034 CAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTCGGTCTGGGC 5751093 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 || ||| ||||| || |||| || | | || |||||||| || || | ||||| Sbjct 5751094 CAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTCAA 5751153 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 |||||| || || | | | | || | ||| || |||| |||| || Sbjct 5751154 AAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCC 5751213 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGG 111123 |||| ||| | || | || | ||| | || ||| ||||| | || | | ||| Sbjct 5751214 CTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCCTCCGGCAGGGG 5751273 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 |||| | || | ||||| | |||||||||||||||||| ||||| |||| ||| | Sbjct 5751274 ATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCCTT 5751333 Query 111184 AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGA 111243 || || | | ||||| | || |||| |||| || | |||||||| || Sbjct 5751334 GAGCTTCTTAAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATGGA 5751390 Query 111244 TGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAA 111303 ||||| ||||| || || |||||||| | || || | ||||| || || || Sbjct 5751391 GGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAA 5751450 Query 111304 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTT 111363 |||| | ||| || || |||| ||||| ||||| |||||| ||||||| || ||||| Sbjct 5751451 GTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTT 5751510 Query 111364 GTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA--CA 111421 | |||||||||| || | || |||||| || | | | || || ||| | | Sbjct 5751511 GAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGA 5751570 Query 111422 TCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCT 111481 | | || || | ||||||||| ||||| |||||| || ||| || | Sbjct 5751571 TTG--AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTT 5751628 Query 111482 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 111541 || || || || ||| | | ||| |||||| || ||||| || || | || ||| Sbjct 5751629 TCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCGAC 5751688 Query 111542 CATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 111601 || | ||| ||||||| || |||||||| || || || |||||||||| |||| Sbjct 5751689 CAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAAC 5751748 Query 111602 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCAT 111660 ||||| | ||| |||||| | || ||| || | | || |||||||| | Sbjct 5751749 AGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTT-CTTCTTCAGTTCCAGGAACTCAAA 5751807 Query 111661 GATATCCGCGTGCCATGGCTCAAGATA 111687 || ||||| |||||| || || | ||| Sbjct 5751808 GACATCCGAGTGCCAGGGTTCCAAATA 5751834 >seq1551 Length=3727775 Score = 129 bits (142), Expect = 7e-25 Identities = 188/263 (71%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 ||||| || ||| | | || |||||||||||||| | ||||||||| || ||||||||| Sbjct 3065295 TCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTTG 3065354 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 || | ||| | | | | ||||| || ||||| || ||| || ||||| || || || Sbjct 3065355 TTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTCC 3065413 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 ||||||||| || ||| | ||||| || || | | | ||| |||||||||| ||| Sbjct 3065414 GTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCACG 3065473 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| ||| | | ||| |||| ||||||| |||| ||| ||||| | ||||| Sbjct 3065474 CTTGTCATTCCTTTTGAAACAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCCATC 3065533 Query 182045 CGCCATATGGGCAATAGAGCGCT 182067 | ||| | | ||| ||||||| Sbjct 3065534 CACCAGACTAGGAATGGAGCGCT 3065556 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/203 (71%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 182675 AGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACC 182734 ||| ||||| ||||| | |||||| | ||| |||||||| ||||||||||| || || Sbjct 3066203 AGCTTCCCGCACATTTAGAAGTTTACCCCTAAGCGGGAACACGCCGTAGTGATCTCGTCC 3066262 Query 182735 AACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAG 182794 | || ||||| | || || | | || || || || |||||||||| ||||| Sbjct 3066263 GATCACGCCCAGACCAGATACGGCTAATGACTTGGCTGAGTCTCCCTCCGTGAGGATGAG 3066322 Query 182795 AGTACACTTTCCAGA-TTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATAC 182853 || || || ||| || | | |||||||| ||| ||||| |||| ||||||||| | Sbjct 3066323 GGTGCAATTAATAGAGTTCTTTC-CACCCGCCTCGTTAGCGTCTTCCAGCTTGGGAATGC 3066381 Query 182854 CGGTAATTTTG---GACTTGCGA 182873 | | || ||| ||||||||| Sbjct 3066382 CCTTGATCTTGCTTGACTTGCGA 3066404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627916355757600