Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1557 140 4e-28 seq1551 123 3e-23 >seq1557 Length=14215200 Score = 140 bits (154), Expect = 4e-28 Identities = 286/419 (68%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATAT--TCTCCA 129785 || ||| | ||| ||||||||| ||||| ||||| ||||||| || ||||| |||||| Sbjct 5421668 TACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCA-GC-GATATCATCTCCA 5421725 Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 | || | ||||||||| || | ||| | || | || || | || ||| | || Sbjct 5421726 TGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAAC 5421785 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | |||| ||| |||||||||||| |||||| ||| | ||||| ||||| | || Sbjct 5421786 GGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTGA 5421845 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 || || || || || |||| ||| ||| ||| |||| || || || | ||| || Sbjct 5421846 CGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTCGA 5421905 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCC 130024 ||| || || || || ||| | | || || ||| | ||||||||| || Sbjct 5421906 TGATGCGCT-CGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTCG 5421964 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 ||| | |||||||| || ||||| || || || |||||| || || ||||| ||| Sbjct 5421965 CAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGA 5422024 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||| | ||||||||| | || ||| |||||| || |||||||| Sbjct 5422025 CCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCCCTCCAC 5422083 >seq1551 Length=3727775 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123 ||||||||| ||| | | || || ||||||||||| | ||||||||| ||||| || || Sbjct 3065294 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTT 3065353 Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182 ||| | ||||| | | | ||||| || || || || ||| || ||||| || || | Sbjct 3065354 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 3065412 Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCAT 179242 |||| ||||| |||||| | |||||||| || | | | ||| |||||||||| |||| Sbjct 3065413 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 3065472 Query 179243 CCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTT 179279 |||| ||| | | ||| || | |||||||||| Sbjct 3065473 GCTTGTCATTCCTTTTGAAACAAGTGAACATCACCTT 3065509 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 179934 AGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACC 179993 ||| || || |||||| | || || | || |||||||| ||||||||||| || || Sbjct 3066203 AGCTTCCCGCACATTTAGAAGTTTACCCCTAAGCGGGAACACGCCGTAGTGATCTCGTCC 3066262 Query 179994 AACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 180053 | ||| ||||||| || || | | ||| || || || |||||||| | |||||| Sbjct 3066263 GATCACGCCCAGACCAGATACGGCTAATGACTTGGCTGAGTCTCCCTCCGTGAGGATGAG 3066322 Query 180054 CGTACACTTTCCAGA-TTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGGAATAC 180112 || || || ||| || | | ||| |||| ||| ||||| |||| ||||||||| | Sbjct 3066323 GGTGCAATTAATAGAGTTCTTTCCACCC-GCCTCGTTAGCGTCTTCCAGCTTGGGAATGC 3066381 Query 180113 CAGTAATTTTG---GACTTACGAGCGCC 180137 | | || ||| ||||| ||| |||| Sbjct 3066382 CCTTGATCTTGCTTGACTTGCGACCGCC 3066409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618321322888360