Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 140 4e-28
seq1551 123 3e-23
>seq1557
Length=14215200
Score = 140 bits (154), Expect = 4e-28
Identities = 286/419 (68%), Gaps = 6/419 (1%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATAT--TCTCCA 129785
|| ||| | ||| ||||||||| ||||| ||||| ||||||| || ||||| ||||||
Sbjct 5421668 TACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCA-GC-GATATCATCTCCA 5421725
Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845
| || | ||||||||| || | ||| | || | || || | || ||| | ||
Sbjct 5421726 TGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAAC 5421785
Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905
| |||| ||| |||||||||||| |||||| ||| | ||||| ||||| | ||
Sbjct 5421786 GGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTGA 5421845
Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965
|| || || || || |||| ||| ||| ||| |||| || || || | ||| ||
Sbjct 5421846 CGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTCGA 5421905
Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCC 130024
||| || || || || ||| | | || || ||| | ||||||||| ||
Sbjct 5421906 TGATGCGCT-CGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTCG 5421964
Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084
||| | |||||||| || ||||| || || || |||||| || || ||||| |||
Sbjct 5421965 CAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGA 5422024
Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
|| |||||||| | ||||||||| | || ||| |||||| || ||||||||
Sbjct 5422025 CCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCCCTCCAC 5422083
>seq1551
Length=3727775
Score = 123 bits (136), Expect = 3e-23
Identities = 159/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123
||||||||| ||| | | || || ||||||||||| | ||||||||| ||||| || ||
Sbjct 3065294 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTT 3065353
Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182
||| | ||||| | | | ||||| || || || || ||| || ||||| || || |
Sbjct 3065354 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 3065412
Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCAT 179242
|||| ||||| |||||| | |||||||| || | | | ||| |||||||||| ||||
Sbjct 3065413 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 3065472
Query 179243 CCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTT 179279
|||| ||| | | ||| || | ||||||||||
Sbjct 3065473 GCTTGTCATTCCTTTTGAAACAAGTGAACATCACCTT 3065509
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/208 (70%), Gaps = 5/208 (2%)
Strand=Plus/Plus
Query 179934 AGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACC 179993
||| || || |||||| | || || | || |||||||| ||||||||||| || ||
Sbjct 3066203 AGCTTCCCGCACATTTAGAAGTTTACCCCTAAGCGGGAACACGCCGTAGTGATCTCGTCC 3066262
Query 179994 AACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 180053
| ||| ||||||| || || | | ||| || || || |||||||| | ||||||
Sbjct 3066263 GATCACGCCCAGACCAGATACGGCTAATGACTTGGCTGAGTCTCCCTCCGTGAGGATGAG 3066322
Query 180054 CGTACACTTTCCAGA-TTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGGAATAC 180112
|| || || ||| || | | ||| |||| ||| ||||| |||| ||||||||| |
Sbjct 3066323 GGTGCAATTAATAGAGTTCTTTCCACCC-GCCTCGTTAGCGTCTTCCAGCTTGGGAATGC 3066381
Query 180113 CAGTAATTTTG---GACTTACGAGCGCC 180137
| | || ||| ||||| ||| ||||
Sbjct 3066382 CCTTGATCTTGCTTGACTTGCGACCGCC 3066409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618321322888360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |