Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 188 8e-43
seq1557 93.3 5e-14
seq1551 89.7 6e-13
>seq1555
Length=7220098
Score = 188 bits (208), Expect = 8e-43
Identities = 637/985 (65%), Gaps = 13/985 (1%)
Strand=Plus/Minus
Query 104618 TATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGT 104677
||| | || || |||||| ||||| || | |||||||| || || ||| ||
Sbjct 5751834 TATTTGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAGAACACGGGC 5751775
Query 104678 GACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATG 104737
| || ||| || |||||||| || | ||| || ||||| || ||||||||||||
Sbjct 5751774 AAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATG 5751715
Query 104738 AAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTC 104797
|| | ||||||| | || ||||||| ||| | || || ||||| |||||||||
Sbjct 5751714 AAACGCGTTGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCTGGTCTC 5751655
Query 104798 TCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGG 104857
||| | ||| || || || ||| || ||| || |||||| |||| ||||||
Sbjct 5751654 CACGAAGTGTGGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGG 5751595
Query 104858 GCGACTGCGACGGTGCCAGCTGCCGAT--GTGTGGAAAGCTATTCTCAAGTCTCAAACCG 104915
|| | ||||| ||| | || ||||| || || | || | ||| |
Sbjct 5751594 GCCAACCGAACGGTTAAGGCT--CAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGG 5751537
Query 104916 AGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 104975
|||| || | || |||||||| | ||| ||||| || ||| ||||| || || |||
Sbjct 5751536 AGACCGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGA 5751477
Query 104976 ATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT-TTACAGACAAA 105034
|| |||| |||||| | ||| | || || |||||| | |||| || | ||
Sbjct 5751476 ATGTGGGCACCATCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATATTCCTCAC-CG 5751418
Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 105094
||||||| || || || ||| | || || ||||| ||| || || || || |||
Sbjct 5751417 GATGAGATTGCAGTCTGCAACTTGGCCTCCATCGCCCTCAACATGTTCGTCACGCCGGAG 5751358
Query 105095 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTA 105154
||||| | ||||| | | || ||| | ||||| || || | || |||||||| |||
Sbjct 5751357 ---AAGACGTATGATTTTAAGAAGCTCAAGGAAGTCACCAAGATAGTTACCAAAAATCTA 5751301
Query 105155 AACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGA 105214
|||| | ||||||| || | ||| ||| | | || | || || ||| ||||
Sbjct 5751300 AACAAGATAATTGATATCAACTATTATCCCCTGCCGGAGGCAAGGAAGTCCAATTTGAGG 5751241
Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 105274
|||||||| | || | ||| ||||||| |||| |||| || ||||| || |
Sbjct 5751240 CACCGTCCCGTGGGCATTGGTATTCAGGGATTCGCTGATGCCTTGATTCTCATGCGTTTC 5751181
Query 105275 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCAC 105334
| | || ||| ||||| | ||| || ||||| || ||||| || |
Sbjct 5751180 CCGTACGAAAGCGAAGAAGCCGGTCTTTTGAATCAGCAGATATTCGAAACCATTTACTAT 5751121
Query 105335 GCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 105394
| ||| | || || || | || |||| || || ||| |||| ||||||| |||
Sbjct 5751120 GGCGCCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAAGGTGCATACGAAACCTACGAG 5751061
Query 105395 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG--AAGGTGAGACCAAGC 105452
|| || | |||| | | || | || ||||||| |||||| | | | |
Sbjct 5751060 GGCAGCCCGGTGAGCAAAGGAATTTTGCAGTACGACATGTGGGACAAGGTGCCAACGAAC 5751001
Query 105453 TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 105512
| | |||||| | | ||||| ||| ||| || | ||| | || ||| |
Sbjct 5751000 --CTGTGGGACTGGCAGAAATTGAAGGAGTCCATTAAGAAGCACGGTGTCCGGAACTCCC 5750943
Query 105513 TCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 105572
| ||| | ||||| ||||| || || || || || || || |||| || ||||||| ||
Sbjct 5750942 TGCTCGTTGCTCCCATGCCCACTGCATCTACGGCTCAGATAATGGGCAACAATGAATCCT 5750883
Query 105573 TTGAACCCTACACGACGAACATCTA 105597
| || |||||||| |||||||| ||
Sbjct 5750882 TCGAGCCCTACACCACGAACATATA 5750858
>seq1557
Length=14215200
Score = 93.3 bits (102), Expect = 5e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863
||||| || |||| ||||| || ||||| || |||||| || |||| | |
Sbjct 5422107 GAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATTTTCTTCAGCGGCAGCTTCGCCTCC 5422048
Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923
|||| ||||| |||||||| ||||| ||||| || | ||||||||||||||| |||
Sbjct 5422047 ATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTCCAACGAGCTGATC 5421988
Query 94924 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959
||||| |||||||| | ||| || ||||| |||
Sbjct 5421987 TCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG 5421952
>seq1551
Length=3727775
Score = 89.7 bits (98), Expect = 6e-13
Identities = 169/246 (69%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516
||| || || ||| | | || |||||||| ||||| | |||||||| ||||| || ||
Sbjct 3065294 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTT 3065353
Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCAC 168575
||| | ||||| | | | |||| || || || || || || || || || || |
Sbjct 3065354 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 3065412
Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 168635
|||||||||| || | |||| || || || | | | ||| ||||| |||| ||||
Sbjct 3065413 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 3065472
Query 168636 CCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 168695
|||| |||| | | ||| || | | |||| ||||| || || ||||| | ||||
Sbjct 3065473 GCTTGTCATTCCTTTTGAAACAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCCAT 3065532
Query 168696 CCGCCA 168701
|| |||
Sbjct 3065533 CCACCA 3065538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583153399814440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |