Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1555 188 8e-43 seq1557 93.3 5e-14 seq1551 89.7 6e-13 >seq1555 Length=7220098 Score = 188 bits (208), Expect = 8e-43 Identities = 637/985 (65%), Gaps = 13/985 (1%) Strand=Plus/Minus Query 104618 TATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGT 104677 ||| | || || |||||| ||||| || | |||||||| || || ||| || Sbjct 5751834 TATTTGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAGAACACGGGC 5751775 Query 104678 GACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATG 104737 | || ||| || |||||||| || | ||| || ||||| || |||||||||||| Sbjct 5751774 AAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATG 5751715 Query 104738 AAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTC 104797 || | ||||||| | || ||||||| ||| | || || ||||| ||||||||| Sbjct 5751714 AAACGCGTTGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCTGGTCTC 5751655 Query 104798 TCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGG 104857 ||| | ||| || || || ||| || ||| || |||||| |||| |||||| Sbjct 5751654 CACGAAGTGTGGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGG 5751595 Query 104858 GCGACTGCGACGGTGCCAGCTGCCGAT--GTGTGGAAAGCTATTCTCAAGTCTCAAACCG 104915 || | ||||| ||| | || ||||| || || | || | ||| | Sbjct 5751594 GCCAACCGAACGGTTAAGGCT--CAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGG 5751537 Query 104916 AGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 104975 |||| || | || |||||||| | ||| ||||| || ||| ||||| || || ||| Sbjct 5751536 AGACCGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGA 5751477 Query 104976 ATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT-TTACAGACAAA 105034 || |||| |||||| | ||| | || || |||||| | |||| || | || Sbjct 5751476 ATGTGGGCACCATCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATATTCCTCAC-CG 5751418 Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 105094 ||||||| || || || ||| | || || ||||| ||| || || || || ||| Sbjct 5751417 GATGAGATTGCAGTCTGCAACTTGGCCTCCATCGCCCTCAACATGTTCGTCACGCCGGAG 5751358 Query 105095 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTA 105154 ||||| | ||||| | | || ||| | ||||| || || | || |||||||| ||| Sbjct 5751357 ---AAGACGTATGATTTTAAGAAGCTCAAGGAAGTCACCAAGATAGTTACCAAAAATCTA 5751301 Query 105155 AACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGA 105214 |||| | ||||||| || | ||| ||| | | || | || || ||| |||| Sbjct 5751300 AACAAGATAATTGATATCAACTATTATCCCCTGCCGGAGGCAAGGAAGTCCAATTTGAGG 5751241 Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 105274 |||||||| | || | ||| ||||||| |||| |||| || ||||| || | Sbjct 5751240 CACCGTCCCGTGGGCATTGGTATTCAGGGATTCGCTGATGCCTTGATTCTCATGCGTTTC 5751181 Query 105275 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCAC 105334 | | || ||| ||||| | ||| || ||||| || ||||| || | Sbjct 5751180 CCGTACGAAAGCGAAGAAGCCGGTCTTTTGAATCAGCAGATATTCGAAACCATTTACTAT 5751121 Query 105335 GCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 105394 | ||| | || || || | || |||| || || ||| |||| ||||||| ||| Sbjct 5751120 GGCGCCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAAGGTGCATACGAAACCTACGAG 5751061 Query 105395 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG--AAGGTGAGACCAAGC 105452 || || | |||| | | || | || ||||||| |||||| | | | | Sbjct 5751060 GGCAGCCCGGTGAGCAAAGGAATTTTGCAGTACGACATGTGGGACAAGGTGCCAACGAAC 5751001 Query 105453 TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 105512 | | |||||| | | ||||| ||| ||| || | ||| | || ||| | Sbjct 5751000 --CTGTGGGACTGGCAGAAATTGAAGGAGTCCATTAAGAAGCACGGTGTCCGGAACTCCC 5750943 Query 105513 TCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 105572 | ||| | ||||| ||||| || || || || || || || |||| || ||||||| || Sbjct 5750942 TGCTCGTTGCTCCCATGCCCACTGCATCTACGGCTCAGATAATGGGCAACAATGAATCCT 5750883 Query 105573 TTGAACCCTACACGACGAACATCTA 105597 | || |||||||| |||||||| || Sbjct 5750882 TCGAGCCCTACACCACGAACATATA 5750858 >seq1557 Length=14215200 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || |||| ||||| || ||||| || |||||| || |||| | | Sbjct 5422107 GAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATTTTCTTCAGCGGCAGCTTCGCCTCC 5422048 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||| ||||| |||||||| ||||| ||||| || | ||||||||||||||| ||| Sbjct 5422047 ATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTCCAACGAGCTGATC 5421988 Query 94924 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959 ||||| |||||||| | ||| || ||||| ||| Sbjct 5421987 TCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG 5421952 >seq1551 Length=3727775 Score = 89.7 bits (98), Expect = 6e-13 Identities = 169/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516 ||| || || ||| | | || |||||||| ||||| | |||||||| ||||| || || Sbjct 3065294 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTT 3065353 Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCAC 168575 ||| | ||||| | | | |||| || || || || || || || || || || | Sbjct 3065354 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 3065412 Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 168635 |||||||||| || | |||| || || || | | | ||| ||||| |||| |||| Sbjct 3065413 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 3065472 Query 168636 CCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 168695 |||| |||| | | ||| || | | |||| ||||| || || ||||| | |||| Sbjct 3065473 GCTTGTCATTCCTTTTGAAACAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCCAT 3065532 Query 168696 CCGCCA 168701 || ||| Sbjct 3065533 CCACCA 3065538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583153399814440