Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 196 5e-45
seq1557 102 9e-17
>seq1555
Length=7220098
Score = 196 bits (216), Expect = 5e-45
Identities = 501/757 (66%), Gaps = 8/757 (1%)
Strand=Plus/Plus
Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116
|| |||| |||||| || || |||| ||||| ||| || | |||||| ||||||
Sbjct 5751389 GAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCAC 5751448
Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176
|| || ||||||||||||| | |||| ||||||||||||| ||| || ||||||
Sbjct 5751449 AAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 5751508
Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236
||| || ||||||||| | |||||||| || || || | | | | ||| | |
Sbjct 5751509 TTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGG 5751568
Query 79237 TCCCGGGCCCGGACAACCTTC--TTGTACCGACCCTGTGCGACGTACGTCCGGTACAACT 79294
| ||| || | ||| ||| |||||||| | |||| || ||||| ||
Sbjct 5751569 GATTGAGCCTTAAC--CGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCT 5751626
Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354
| ||| | || || | || ||| | || || || |||| ||| |||||||| ||
Sbjct 5751627 TTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCG 5751686
Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414
||| || ||| |||||| | ||||||||| || || ||||||||||| |
Sbjct 5751687 ACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAA 5751746
Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474
| || ||||| || |||| || | |||| |||| ||| || || || || |
Sbjct 5751747 ACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAA 5751806
Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534
|| || | |||||| || |||| ||| ||||| || | ||| ||||||||||| |
Sbjct 5751807 AGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACCGGGACGCTTGCCGCCTC 5751866
Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594
|||| | || || || ||| || ||||| || | |||||||| || | || | ||
Sbjct 5751867 CCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCATGGGAACCAACCCATTGG 5751926
Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCA-GTGGAT 79652
|| || || ||| || || || | || |||||| | | ||| || ||
Sbjct 5751927 AAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATG--CAATGCACGTTGAG 5751984
Query 79653 TCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCC 79712
||||||||| |||| |||||||||| ||||| | | | | || | | |||||
Sbjct 5751985 TCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGACTTGAAAATGCC 5752044
Query 79713 CTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGT 79772
|||||| |||||| | |||| | | ||||| || ||||| ||| || ||| ||
Sbjct 5752045 CTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAACTGCGGCCGGTTTGT 5752104
Query 79773 ACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809
| ||| || || || |||| || |||||||||
Sbjct 5752105 GGCAGCGGCAAACAGTGTGGGCGATGCATGCGTGAAG 5752141
>seq1557
Length=14215200
Score = 102 bits (112), Expect = 9e-17
Identities = 344/529 (65%), Gaps = 9/529 (2%)
Strand=Plus/Minus
Query 59612 TTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCT 59671
||| |||||| ||||||||||| | || | || ||||| | || ||| || ||
Sbjct 5422477 TTCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGGCACCGCCT 5422418
Query 59672 CAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGG 59731
|| ||||||||| ||||||||| | || |||||||||||||| || ||||||
Sbjct 5422417 GAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCTGATGG 5422358
Query 59732 AATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCG 59791
|| || | || || | | | ||| |||| || ||||| | ||||| ||
Sbjct 5422357 CATCGTAAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCACG 5422298
Query 59792 GTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCA 59850
| ||||||| | ||| ||| || ||| | ||||| |||| |||| |
Sbjct 5422297 ATGCTTCTACGGCTTCCAGATCGC-CATGGAGAACGTGCACTCGGAGATGTACAGTGTTT 5422239
Query 59851 TGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA 59910
||||||| | | || |||||| | || | |||||| || || || |
Sbjct 5422238 TGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTGTTCAACGCTATCGAAA 5422179
Query 59911 CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAG-TCC---TGGA 59966
|| || || || || | || ||||| |||||| || ||||| ||| | |
Sbjct 5422178 CGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCATCCAAGTCGG 5422119
Query 59967 GCATCATTT-GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGG 60025
|| |||| | | || |||| || ||||| |||||| || || |||||| ||
Sbjct 5422118 CCA--ATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATTTTCTTCAGCGG 5422061
Query 60026 CTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085
| ||| | ||||||||||| || ||||| || || ||||| || ||| |||||
Sbjct 5422060 CAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTC 5422001
Query 60086 CAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134
|||||||||||| || || ||||||||| | || || ||||| |||
Sbjct 5422000 CAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG 5421952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548423796014640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |