Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1555 196 5e-45 seq1557 102 9e-17 >seq1555 Length=7220098 Score = 196 bits (216), Expect = 5e-45 Identities = 501/757 (66%), Gaps = 8/757 (1%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| |||||| || || |||| ||||| ||| || | |||||| |||||| Sbjct 5751389 GAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCAC 5751448 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || || ||||||||||||| | |||| ||||||||||||| ||| || |||||| Sbjct 5751449 AAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 5751508 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||| || ||||||||| | |||||||| || || || | | | | ||| | | Sbjct 5751509 TTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGG 5751568 Query 79237 TCCCGGGCCCGGACAACCTTC--TTGTACCGACCCTGTGCGACGTACGTCCGGTACAACT 79294 | ||| || | ||| ||| |||||||| | |||| || ||||| || Sbjct 5751569 GATTGAGCCTTAAC--CGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCT 5751626 Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | ||| | || || | || ||| | || || || |||| ||| |||||||| || Sbjct 5751627 TTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCG 5751686 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 ||| || ||| |||||| | ||||||||| || || ||||||||||| | Sbjct 5751687 ACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAA 5751746 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 | || ||||| || |||| || | |||| |||| ||| || || || || | Sbjct 5751747 ACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAA 5751806 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 || || | |||||| || |||| ||| ||||| || | ||| ||||||||||| | Sbjct 5751807 AGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACCGGGACGCTTGCCGCCTC 5751866 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 |||| | || || || ||| || ||||| || | |||||||| || | || | || Sbjct 5751867 CCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCATGGGAACCAACCCATTGG 5751926 Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCA-GTGGAT 79652 || || || ||| || || || | || |||||| | | ||| || || Sbjct 5751927 AAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATG--CAATGCACGTTGAG 5751984 Query 79653 TCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCC 79712 ||||||||| |||| |||||||||| ||||| | | | | || | | ||||| Sbjct 5751985 TCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGACTTGAAAATGCC 5752044 Query 79713 CTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGT 79772 |||||| |||||| | |||| | | ||||| || ||||| ||| || ||| || Sbjct 5752045 CTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAACTGCGGCCGGTTTGT 5752104 Query 79773 ACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809 | ||| || || || |||| || ||||||||| Sbjct 5752105 GGCAGCGGCAAACAGTGTGGGCGATGCATGCGTGAAG 5752141 >seq1557 Length=14215200 Score = 102 bits (112), Expect = 9e-17 Identities = 344/529 (65%), Gaps = 9/529 (2%) Strand=Plus/Minus Query 59612 TTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCT 59671 ||| |||||| ||||||||||| | || | || ||||| | || ||| || || Sbjct 5422477 TTCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGGCACCGCCT 5422418 Query 59672 CAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGG 59731 || ||||||||| ||||||||| | || |||||||||||||| || |||||| Sbjct 5422417 GAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCTGATGG 5422358 Query 59732 AATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCG 59791 || || | || || | | | ||| |||| || ||||| | ||||| || Sbjct 5422357 CATCGTAAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCACG 5422298 Query 59792 GTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCA 59850 | ||||||| | ||| ||| || ||| | ||||| |||| |||| | Sbjct 5422297 ATGCTTCTACGGCTTCCAGATCGC-CATGGAGAACGTGCACTCGGAGATGTACAGTGTTT 5422239 Query 59851 TGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA 59910 ||||||| | | || |||||| | || | |||||| || || || | Sbjct 5422238 TGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTGTTCAACGCTATCGAAA 5422179 Query 59911 CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAG-TCC---TGGA 59966 || || || || || | || ||||| |||||| || ||||| ||| | | Sbjct 5422178 CGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCATCCAAGTCGG 5422119 Query 59967 GCATCATTT-GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGG 60025 || |||| | | || |||| || ||||| |||||| || || |||||| || Sbjct 5422118 CCA--ATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATTTTCTTCAGCGG 5422061 Query 60026 CTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085 | ||| | ||||||||||| || ||||| || || ||||| || ||| ||||| Sbjct 5422060 CAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTC 5422001 Query 60086 CAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134 |||||||||||| || || ||||||||| | || || ||||| ||| Sbjct 5422000 CAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG 5421952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548423796014640