Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1551 159 4e-34
seq1557 125 8e-24
seq1555 96.9 4e-15
>seq1551
Length=3727775
Score = 159 bits (176), Expect = 4e-34
Identities = 305/446 (68%), Gaps = 4/446 (1%)
Strand=Plus/Plus
Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933
|||| || ||||||||||| || ||||| |||| | |||||| | || || ||
Sbjct 3065113 ATCCAGTTCCGATGCCCTCGGCTCCGTTTACCAATACCATCGGTATGATGGGAAGATACC 3065172
Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993
|| ||||| | || ||| || || |||| | ||| | ||||| | || ||| |
Sbjct 3065173 ACAGTGGCTCGATCTTTTGGCCATCGTCCACCTGGTAATCCAAAAGTGGATCGTCCAATG 3065232
Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053
||| | | || |||| |||| ||| || ||||| ||||| || | ||||||
Sbjct 3065233 GATGGTAGATGAGTCGCGTCAAGGGAGACATTAAAGTGAAAATGTAACGAGCGCTGGCAC 3065292
Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113
||| ||||| || | || || || ||||| || || ||||| || || || | ||
Sbjct 3065293 AATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGT 3065352
Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173
|||| || ||||| |||||||| |||| ||| || || || |||||| | || |
Sbjct 3065353 TGTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGCAGGGATACCTCTC 3065412
Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-C 152232
||||||| || |||| | |||||| | |||| | | ||| |||||||||| || |
Sbjct 3065413 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 3065472
Query 152233 G-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291
| | |||| ||| | |||| ||| | | | |||||||| ||||| || ||||| ||
Sbjct 3065473 GCTTGTCA--TTCCTTTTGAAACAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCC 3065530
Query 152292 GTCCACCACGTGAGGAATCGAACGCT 152317
||||||| |||||| || ||||
Sbjct 3065531 ATCCACCAGACTAGGAATGGAGCGCT 3065556
Score = 132 bits (146), Expect = 5e-26
Identities = 208/293 (71%), Gaps = 6/293 (2%)
Strand=Plus/Plus
Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAG-CAAGACGCGTACCGAATT 117362
||||||||||||||||| ||| ||| ||| ||||| || | |||| || ||||| ||||
Sbjct 3065267 AGTGAAAATGTAACGAGCGCTGGCACAATCTTTGCCTCCCGTCAAG-CGGGTACCAAATT 3065325
Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422
| || | ||||| | || || | |||||| || |||||||| || || |||| || |
Sbjct 3065326 GACCGCGTGGCTCAAGCAGATTAATGTTGTTCGCACCCACAAAATTCTGGGCCAGATTTA 3065385
Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482
| || || || ||| |||| || ||||| || |||| | ||||||||| | |
Sbjct 3065386 CGATTGTCATCTGCAGGGATACCTCTCCGTGGTGGTAGGCCGACATCTCCGCCACTGATC 3065445
Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTTGAGGCAGGCATAAAT 117540
| | ||||| |||||||||| || | |||| ||| | |||| || | | ||
Sbjct 3065446 CGGATAGCTGGGCCACCTTCACCTCACGCTTGTCA--TTCCTTTTGAAACAAGTGAACAT 3065503
Query 117541 CACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCT 117593
|||||| ||||||| ||||||| |||||| ||| ||| || || ||||
Sbjct 3065504 CACCTTCCGCTGACCCGGCTTCAAGCCATCCACCAGACTAGGAATGGAGCGCT 3065556
>seq1557
Length=14215200
Score = 125 bits (138), Expect = 8e-24
Identities = 522/808 (65%), Gaps = 33/808 (4%)
Strand=Plus/Plus
Query 74477 CTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAAGGGTT 74536
||| || |||||||||||||| || |||| ||| || ||||||| ||| || |||||
Sbjct 5421682 CTTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCATCTCCATGAAGTTAAATGGGTT 5421741
Query 74537 CTTTGCACCGTAAATAGGCTTCTCC----CCAAACTGTGCCATGAGG---CGATCCGCCA 74589
|| | ||| || ||| ||| || |||| ||| ||| || ||||| |
Sbjct 5421742 TTTGGTGTTGTAGAT---CTT-TCCAACGCCCAACT---CCACGAGCAAACGGTCCGCTA 5421794
Query 74590 CAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGTG 74649
| || | ||||||||| | ||| | || ||||||||| | ||| ||||| |
Sbjct 5421795 CGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTGACGGGCAGGG 5421854
Query 74650 CCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCTTGTGAATGTC 74707
| ||||||| ||||| ||| | | || | | | | | || |||| | |||
Sbjct 5421855 CATCGGTGAGGAACTCCTGCTCTA--TGGCCACCGCGTCGCGGATGATCTCGATGATGCG 5421912
Query 74708 TTTG-GAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACTCCTGATGCG 74766
| | | || | | | | |||||| | | | | ||||||||| || |||
Sbjct 5421913 CTCGCGCTTGGGTCGCTGCAC-CAGGTGCTGGAACATCAGCACGGCAAAGTCGCAGTGCA 5421971
Query 74767 AGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCT 74826
|||| || || | |||| || || || || | | |||||||| || || ||||
Sbjct 5421972 AGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCT 5422031
Query 74827 TCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAA 74886
|||| | ||| || |||| |||| || |||||||| ||||| || || ||||
Sbjct 5422032 TCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCCCTCCACGGCGGCAA 5422091
Query 74887 AGGCGACAAGGCGTTGCGCGAACGGTGCA---TCGGAAGTCATCCAAGTCTGAGCCCATT 74943
|||||| | ||| | | |||| || | ||| | ||||| | | | ||||| |
Sbjct 5422092 AGGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGATGAGATCCAGGACAGGGCCCAGT 5422151
Query 74944 CAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCT- 75002
| || || || || || || || | || ||||| || | ||| ||| | | || ||
Sbjct 5422152 CTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGG--TACTCTCGCTG 5422209
Query 75003 -TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTC 75061
| |||||| || | |||| |||| || |||| ||||||| || | |||
Sbjct 5422210 GTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTC 5422269
Query 75062 GTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGA 75118
|| ||| |||| | ||||||| | || ||||| | ||||| || |||| |||
Sbjct 5422270 CATGG-CGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGA 5422328
Query 75119 AAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178
| || | | ||||| | |||||||| || ||||||||||| || ||||| ||
Sbjct 5422329 AGCGCTCCA--CCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCGAAGAAGGCCAGCAC 5422386
Query 75179 CATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGC 75238
||| || |||||||| ||||| | || || ||| || | |||||| |
Sbjct 5422387 GTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAGGTCCTTGGA 5422446
Query 75239 CAAATCAATCTCCTCGACCGTCCAGAAA 75266
|||||| | ||||||||| |||||||||
Sbjct 5422447 CAAATCCACCTCCTCGACGGTCCAGAAA 5422474
>seq1555
Length=7220098
Score = 96.9 bits (106), Expect = 4e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|| |||||||||||||| || || ||||| || || || ||||||||||| |||||||||
Sbjct 5750952 CGGAACTCCCTGCTCGTTGCTCCCATGCCCACTGCATCTACGGCTCAGATAATGGGCAAC 5750893
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579
|| || | |||||||| ||||| || ||||| |||
Sbjct 5750892 AATGAATCCTTCGAGCCCTACACCACGAACATATAC 5750857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547115237013800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |