Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1551 159 4e-34 seq1557 125 8e-24 seq1555 96.9 4e-15 >seq1551 Length=3727775 Score = 159 bits (176), Expect = 4e-34 Identities = 305/446 (68%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || ||||||||||| || ||||| |||| | |||||| | || || || Sbjct 3065113 ATCCAGTTCCGATGCCCTCGGCTCCGTTTACCAATACCATCGGTATGATGGGAAGATACC 3065172 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 || ||||| | || ||| || || |||| | ||| | ||||| | || ||| | Sbjct 3065173 ACAGTGGCTCGATCTTTTGGCCATCGTCCACCTGGTAATCCAAAAGTGGATCGTCCAATG 3065232 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 ||| | | || |||| |||| ||| || ||||| ||||| || | |||||| Sbjct 3065233 GATGGTAGATGAGTCGCGTCAAGGGAGACATTAAAGTGAAAATGTAACGAGCGCTGGCAC 3065292 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 ||| ||||| || | || || || ||||| || || ||||| || || || | || Sbjct 3065293 AATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGT 3065352 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 |||| || ||||| |||||||| |||| ||| || || || |||||| | || | Sbjct 3065353 TGTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGCAGGGATACCTCTC 3065412 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-C 152232 ||||||| || |||| | |||||| | |||| | | ||| |||||||||| || | Sbjct 3065413 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 3065472 Query 152233 G-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291 | | |||| ||| | |||| ||| | | | |||||||| ||||| || ||||| || Sbjct 3065473 GCTTGTCA--TTCCTTTTGAAACAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCC 3065530 Query 152292 GTCCACCACGTGAGGAATCGAACGCT 152317 ||||||| |||||| || |||| Sbjct 3065531 ATCCACCAGACTAGGAATGGAGCGCT 3065556 Score = 132 bits (146), Expect = 5e-26 Identities = 208/293 (71%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAG-CAAGACGCGTACCGAATT 117362 ||||||||||||||||| ||| ||| ||| ||||| || | |||| || ||||| |||| Sbjct 3065267 AGTGAAAATGTAACGAGCGCTGGCACAATCTTTGCCTCCCGTCAAG-CGGGTACCAAATT 3065325 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | || | ||||| | || || | |||||| || |||||||| || || |||| || | Sbjct 3065326 GACCGCGTGGCTCAAGCAGATTAATGTTGTTCGCACCCACAAAATTCTGGGCCAGATTTA 3065385 Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 | || || || ||| |||| || ||||| || |||| | ||||||||| | | Sbjct 3065386 CGATTGTCATCTGCAGGGATACCTCTCCGTGGTGGTAGGCCGACATCTCCGCCACTGATC 3065445 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTTGAGGCAGGCATAAAT 117540 | | ||||| |||||||||| || | |||| ||| | |||| || | | || Sbjct 3065446 CGGATAGCTGGGCCACCTTCACCTCACGCTTGTCA--TTCCTTTTGAAACAAGTGAACAT 3065503 Query 117541 CACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCT 117593 |||||| ||||||| ||||||| |||||| ||| ||| || || |||| Sbjct 3065504 CACCTTCCGCTGACCCGGCTTCAAGCCATCCACCAGACTAGGAATGGAGCGCT 3065556 >seq1557 Length=14215200 Score = 125 bits (138), Expect = 8e-24 Identities = 522/808 (65%), Gaps = 33/808 (4%) Strand=Plus/Plus Query 74477 CTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAAGGGTT 74536 ||| || |||||||||||||| || |||| ||| || ||||||| ||| || ||||| Sbjct 5421682 CTTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCATCTCCATGAAGTTAAATGGGTT 5421741 Query 74537 CTTTGCACCGTAAATAGGCTTCTCC----CCAAACTGTGCCATGAGG---CGATCCGCCA 74589 || | ||| || ||| ||| || |||| ||| ||| || ||||| | Sbjct 5421742 TTTGGTGTTGTAGAT---CTT-TCCAACGCCCAACT---CCACGAGCAAACGGTCCGCTA 5421794 Query 74590 CAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGTG 74649 | || | ||||||||| | ||| | || ||||||||| | ||| ||||| | Sbjct 5421795 CGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTGACGGGCAGGG 5421854 Query 74650 CCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCTTGTGAATGTC 74707 | ||||||| ||||| ||| | | || | | | | | || |||| | ||| Sbjct 5421855 CATCGGTGAGGAACTCCTGCTCTA--TGGCCACCGCGTCGCGGATGATCTCGATGATGCG 5421912 Query 74708 TTTG-GAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACTCCTGATGCG 74766 | | | || | | | | |||||| | | | | ||||||||| || ||| Sbjct 5421913 CTCGCGCTTGGGTCGCTGCAC-CAGGTGCTGGAACATCAGCACGGCAAAGTCGCAGTGCA 5421971 Query 74767 AGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCT 74826 |||| || || | |||| || || || || | | |||||||| || || |||| Sbjct 5421972 AGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCT 5422031 Query 74827 TCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAA 74886 |||| | ||| || |||| |||| || |||||||| ||||| || || |||| Sbjct 5422032 TCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCCCTCCACGGCGGCAA 5422091 Query 74887 AGGCGACAAGGCGTTGCGCGAACGGTGCA---TCGGAAGTCATCCAAGTCTGAGCCCATT 74943 |||||| | ||| | | |||| || | ||| | ||||| | | | ||||| | Sbjct 5422092 AGGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGATGAGATCCAGGACAGGGCCCAGT 5422151 Query 74944 CAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCT- 75002 | || || || || || || || | || ||||| || | ||| ||| | | || || Sbjct 5422152 CTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGG--TACTCTCGCTG 5422209 Query 75003 -TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTC 75061 | |||||| || | |||| |||| || |||| ||||||| || | ||| Sbjct 5422210 GTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTC 5422269 Query 75062 GTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGA 75118 || ||| |||| | ||||||| | || ||||| | ||||| || |||| ||| Sbjct 5422270 CATGG-CGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGA 5422328 Query 75119 AAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 | || | | ||||| | |||||||| || ||||||||||| || ||||| || Sbjct 5422329 AGCGCTCCA--CCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCGAAGAAGGCCAGCAC 5422386 Query 75179 CATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGC 75238 ||| || |||||||| ||||| | || || ||| || | |||||| | Sbjct 5422387 GTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAGGTCCTTGGA 5422446 Query 75239 CAAATCAATCTCCTCGACCGTCCAGAAA 75266 |||||| | ||||||||| ||||||||| Sbjct 5422447 CAAATCCACCTCCTCGACGGTCCAGAAA 5422474 >seq1555 Length=7220098 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || |||||||||||||| || || ||||| || || || ||||||||||| ||||||||| Sbjct 5750952 CGGAACTCCCTGCTCGTTGCTCCCATGCCCACTGCATCTACGGCTCAGATAATGGGCAAC 5750893 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 || || | |||||||| ||||| || ||||| ||| Sbjct 5750892 AATGAATCCTTCGAGCCCTACACCACGAACATATAC 5750857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547115237013800