Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1553 264 9e-66 >seq1553 Length=5866729 Score = 264 bits (292), Expect = 9e-66 Identities = 441/635 (69%), Gaps = 8/635 (1%) Strand=Plus/Plus Query 29832 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTAT 29891 |||| |||||||||||| || | || || || ||||||||| || |||| | Sbjct 1124581 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGTTGCTCCTTCAGCGGCTCTACGTGGT 1124640 Query 29892 CCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29951 |||||||||||| | || |||| | |||| ||||| || ||||| | || || || | Sbjct 1124641 TCAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 1124700 Query 29952 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 30011 | || || ||||||| ||||| || | |||| |||||||||||||||||| || || | Sbjct 1124701 CATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTAAAGGGTACGCCCAGGC 1124760 Query 30012 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG------TCGCTCACGT 30065 ||||||| | |||||||| ||||| ||||| ||||| ||| ||| |||| Sbjct 1124761 CCATGTCGGCGCTTCTCTGGTACAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACGT 1124820 Query 30066 AAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCC 30125 ||||||| || | ||||||||| || || ||||| | ||| || |||| Sbjct 1124821 AAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCC 1124880 Query 30126 AGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTT 30185 | || ||| ||||||||| | |||| || || ||||||||| ||| | | | Sbjct 1124881 AAGCCGACATGATGATGCGTCGGTCTGAGGGCTTATTCCTGATGGTGTCGATCACTTGGC 1124940 Query 30186 GCAGCTGATCCACCCCCATCCCCGAGTAG-TCTGCCCTCATGTCCGTGTACTCTGCTCCG 30244 ||||||| || | ||| | || |||| | | | || || | ||||| || ||| Sbjct 1124941 GCAGCTGGTCGATGCCCTTGCCGCTGTAGTTATCGTCGCAGGTGC-CGTACTGCGCCCCG 1124999 Query 30245 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30304 ||||||||||||||||| ||||||||||| ||||| || || | | | | | ||| Sbjct 1125000 AAATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGACTCGGCCCGTGAAC 1125059 Query 30305 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA 30364 ||| ||||||||| || |||||||| | ||| | |||||||| | || |||| | Sbjct 1125060 CCCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCC 1125119 Query 30365 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30424 ||| ||||| || || ||| |||||||||||||||||||| | || || Sbjct 1125120 TGCAGCAGTTTGGCGTCCGTCTTGCCTGCCACGAACCACAGCAGCTCCTCTGCCACCGCG 1125179 Query 30425 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 | ||||| | ||| || || ||||||||||| Sbjct 1125180 CGGAAGAAGACACGCTTCGTGGTCAGGAGGGGAAA 1125214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406237453443252