Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq1556 102 5e-17
seq1554 96.9 2e-15
>seq1556
Length=7591821
Score = 102 bits (112), Expect = 5e-17
Identities = 158/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || || |||||| |||||||| ||||| ||||| || ||
Sbjct 3894354 AGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGT 3894413
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || |||||||| ||||| || || | |||||| || || || || | ||||||
Sbjct 3894414 CCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCC 3894473
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665
|||||| |||| || | || || | ||| ||||| || | ||| || ||||
Sbjct 3894474 TTGTCTTGGATC-TTAGCCTTCACATTCTCAATGGTGTC--CGATGGCTCAACCTCCAAA 3894530
Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || || | || ||||| || ||||||||
Sbjct 3894531 GTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3894571
Score = 102 bits (112), Expect = 5e-17
Identities = 158/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || || |||||| |||||||| ||||| ||||| || ||
Sbjct 3895038 AGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGT 3895097
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || |||||||| ||||| || || | |||||| || || || || | ||||||
Sbjct 3895098 CCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCC 3895157
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665
|||||| |||| || | || || | ||| ||||| || | ||| || ||||
Sbjct 3895158 TTGTCTTGGATC-TTAGCCTTCACATTCTCAATGGTGTC--CGATGGCTCAACCTCCAAA 3895214
Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || || | || ||||| || ||||||||
Sbjct 3895215 GTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3895255
Score = 98.7 bits (108), Expect = 6e-16
Identities = 157/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||||||||| || |||||| || ||||| ||||| || || || ||
Sbjct 3893214 AGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGT 3893273
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| | ||| || || || || || | |||||| || || || || | |||||||
Sbjct 3893274 CCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCC 3893333
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665
|||||| ||| ||| | || || | ||| ||||| || | ||| || ||||
Sbjct 3893334 TTGTCTTGGAT-TTTAGCCTTCACATTCTCAATGGTGTC--CGATGGCTCAACCTCCAAA 3893390
Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || || | || ||||| || ||||||||
Sbjct 3893391 GTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3893431
Score = 98.7 bits (108), Expect = 6e-16
Identities = 157/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||||||||| || |||||| || ||||| ||||| || || || ||
Sbjct 3893898 AGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGT 3893957
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| | ||| || || || || || | |||||| || || || || | |||||||
Sbjct 3893958 CCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCC 3894017
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665
|||||| ||| ||| | || || | ||| ||||| || | ||| || ||||
Sbjct 3894018 TTGTCTTGGAT-TTTAGCCTTCACATTCTCAATGGTGTC--CGATGGCTCAACCTCCAAA 3894074
Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || || | || ||||| || ||||||||
Sbjct 3894075 GTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3894115
>seq1554
Length=6179234
Score = 96.9 bits (106), Expect = 2e-15
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| || || || |||||| || ||||| || || || || || ||
Sbjct 592992 AGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 592933
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || ||||| || || |||||||| || || || || | |||||||
Sbjct 592932 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 592873
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||| || || ||| ||||||| |||
Sbjct 592872 TTGTCCTGGATC-TTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAGGT 592814
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || | || ||||| || |||||||||
Sbjct 592813 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 592774
Score = 93.3 bits (102), Expect = 3e-14
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| || || || |||||| || ||||| || || || || || ||
Sbjct 593220 AGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 593161
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || ||||| || || |||||||| || || || || | |||||||
Sbjct 593160 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 593101
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || || | ||| || || ||| ||||||| |||
Sbjct 593100 TTGTCCTGGATC-TTGGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAAGGT 593042
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || | || ||||| || |||||||||
Sbjct 593041 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 593002
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| |||||||| || || |||||| || ||||| || || || || || ||
Sbjct 592536 AGACGCAGGACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 592477
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || | || || ||||| || || |||||||| || || || || | |||||||
Sbjct 592476 CCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 592417
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 592416 TTGTCCTGGATCTT 592403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314673095316323
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |