Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1556 102 5e-17 seq1554 96.9 2e-15 >seq1556 Length=7591821 Score = 102 bits (112), Expect = 5e-17 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||| |||||||| ||||| ||||| || || Sbjct 3894354 AGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGT 3894413 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || |||||||| ||||| || || | |||||| || || || || | |||||| Sbjct 3894414 CCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCC 3894473 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 |||||| |||| || | || || | ||| ||||| || | ||| || |||| Sbjct 3894474 TTGTCTTGGATC-TTAGCCTTCACATTCTCAATGGTGTC--CGATGGCTCAACCTCCAAA 3894530 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || | || ||||| || |||||||| Sbjct 3894531 GTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3894571 Score = 102 bits (112), Expect = 5e-17 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||| |||||||| ||||| ||||| || || Sbjct 3895038 AGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGT 3895097 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || |||||||| ||||| || || | |||||| || || || || | |||||| Sbjct 3895098 CCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCC 3895157 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 |||||| |||| || | || || | ||| ||||| || | ||| || |||| Sbjct 3895158 TTGTCTTGGATC-TTAGCCTTCACATTCTCAATGGTGTC--CGATGGCTCAACCTCCAAA 3895214 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || | || ||||| || |||||||| Sbjct 3895215 GTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3895255 Score = 98.7 bits (108), Expect = 6e-16 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||||| || |||||| || ||||| ||||| || || || || Sbjct 3893214 AGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGT 3893273 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||| || || || || || | |||||| || || || || | ||||||| Sbjct 3893274 CCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCC 3893333 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 |||||| ||| ||| | || || | ||| ||||| || | ||| || |||| Sbjct 3893334 TTGTCTTGGAT-TTTAGCCTTCACATTCTCAATGGTGTC--CGATGGCTCAACCTCCAAA 3893390 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || | || ||||| || |||||||| Sbjct 3893391 GTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3893431 Score = 98.7 bits (108), Expect = 6e-16 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||||| || |||||| || ||||| ||||| || || || || Sbjct 3893898 AGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGT 3893957 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||| || || || || || | |||||| || || || || | ||||||| Sbjct 3893958 CCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCC 3894017 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 |||||| ||| ||| | || || | ||| ||||| || | ||| || |||| Sbjct 3894018 TTGTCTTGGAT-TTTAGCCTTCACATTCTCAATGGTGTC--CGATGGCTCAACCTCCAAA 3894074 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || | || ||||| || |||||||| Sbjct 3894075 GTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3894115 >seq1554 Length=6179234 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || || || |||||| || ||||| || || || || || || Sbjct 592992 AGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 592933 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || |||||||| || || || || | ||||||| Sbjct 592932 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 592873 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| || || ||| ||||||| ||| Sbjct 592872 TTGTCCTGGATC-TTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAGGT 592814 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || ||||| || ||||||||| Sbjct 592813 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 592774 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || || || |||||| || ||||| || || || || || || Sbjct 593220 AGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 593161 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || |||||||| || || || || | ||||||| Sbjct 593160 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 593101 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | ||| || || ||| ||||||| ||| Sbjct 593100 TTGTCCTGGATC-TTGGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAAGGT 593042 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || ||||| || ||||||||| Sbjct 593041 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 593002 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||||| || || |||||| || ||||| || || || || || || Sbjct 592536 AGACGCAGGACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 592477 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || || ||||| || || |||||||| || || || || | ||||||| Sbjct 592476 CCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 592417 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 592416 TTGTCCTGGATCTT 592403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314673095316323