Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq1553 212 6e-50
>seq1553
Length=5866729
Score = 212 bits (234), Expect = 6e-50
Identities = 474/708 (67%), Gaps = 8/708 (1%)
Strand=Plus/Plus
Query 6492 TAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGA 6551
|||| | |||| ||| || ||||| || || ||||| || | ||| |||| |
Sbjct 1124575 TAATGATCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGTTGCTCCTTCAGCGGCTCTA 1124634
Query 6552 TGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACC 6611
|||||||||||||| || | ||| |||| || || || | || || || || |
Sbjct 1124635 CGTGGTTCAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGAC 1124694
Query 6612 CCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCC 6671
|| ||||| || ||||||| |||||||| ||||| || ||||| || || || |
Sbjct 1124695 CCGTCACATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTAAAGGGTACGC 1124754
Query 6672 CTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC---ATTC---G 6725
| | |||||||| | || || || |||||||| |||||||| || ||| |
Sbjct 1124755 CCAGGCCCATGTCGGCGCTTCTCTGGTACAGCTGGCACGACAGCTCACCGCGCTTCTCGG 1124814
Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785
|||||| || || | | ||||||||| || || |||||| |||| ||| ||
Sbjct 1124815 AGACGTAAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCG 1124874
Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGG-TTCCGCTTCAAGGTGTCGATC 6844
| ||||| || |||| | ||| | || ||| | |||| || | | | ||||||||||
Sbjct 1124875 GATTCCAAGCCGACATGATGATGCGTCGGTC-TGAGGGCTTATTCCTGATGGTGTCGATC 1124933
Query 6845 ACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCC 6904
|| | |||||||||| |||| || |||| | |||| | |||| |
Sbjct 1124934 ACTTGGCGCAGCTGGTCGATGCCCTTGCCGCTGTAGTTATCGTCGCAGGTGCCGTACTGC 1124993
Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964
||||| || || ||||||||||| ||||| |||||||||| ||||| | | ||
Sbjct 1124994 GCCCCGAAATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGACTCGGCCC 1125053
Query 6965 GGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024
| ||||||| ||||||||| || |||| || | || | |||||||| | ||| |
Sbjct 1125054 GTGAACCCCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTC 1125113
Query 7025 CGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACC 7084
| | ||| |||| || ||| || ||||||||||||||||||||| ||
Sbjct 1125114 TTCGCCTGCAGCAGTTTGGCGTCCGTCTTGCCTGCCACGAACCACAGCAGCTCCTCTGCC 1125173
Query 7085 ACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTAT 7144
|| | || | ||||| ||||| ||||| || ||||| | ||| | || | |
Sbjct 1125174 ACCGCGCGGAAGAAGACACGCTTCGTGGTCAGGAGGGGAAAGGAGTTCCGCATGTCGAAG 1125233
Query 7145 CGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCC 7192
|| ||| ||||||||||||| || || ||| | | || ||||||
Sbjct 1125234 CGCATCTGACTGCCGAACACGGACAGAGTGCCCACCTCCGTGCGGTCC 1125281
Score = 212 bits (234), Expect = 6e-50
Identities = 474/708 (67%), Gaps = 8/708 (1%)
Strand=Plus/Minus
Query 34153 GGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCG 34212
|||||| || | | ||| || || ||||||||||||| ||| || | | || | ||
Sbjct 1125281 GGACCGCACGGAGGTGGGCACTCTGTCCGTGTTCGGCAGTCAGATGCGCTTCGACATGCG 1125222
Query 34213 GGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCT 34272
| | ||||| || ||||| ||||| ||||| | || | |||| ||||||||
Sbjct 1125221 GAACTCCTTTCCCCTCCTGACCACGAAGCGTGTCTTCTTCCGCGCGGTGGCAGAGGAGCT 1125162
Query 34273 GCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGAT 34332
||||||||||||| || ||| || |||| ||| | | | ||| | ||
Sbjct 1125161 GCTGTGGTTCGTGGCAGGCAAGACGGACGCCAAACTGCTGCAGGCGAAGAATGTGCACAT 1125102
Query 34333 CTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGA 34392
|||||| | || | || |||| || ||||||||| ||||||| | || | |
Sbjct 1125101 CTGGGATGGGAACAGCTCCAGAGAATTCCTGGACAAGATGGGGTTCACGGGCCGAGTCGT 1125042
Query 34393 GGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGG 34452
||||| |||||||||| ||||| ||||||||||| || || |||||| |||| |
Sbjct 1125041 TGGCGATCTGGGCCCGGTGTACGGCTTCCAGTGGAGGCATTTCGGGGCGCAGTACGGCAC 1124982
Query 34453 GAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT 34512
|||| | |||| || |||| |||||||||| | |||||||||||| |
Sbjct 1124981 CTGCGACGATAACTACAGCGGCAAGGGCATCGACCAGCTGCGCCAAGTGATCGACACCAT 1124922
Query 34513 GAAGCGGAA-CCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCC 34571
| | || |||| | ||| || | ||| | |||| || ||||| ||| ||| |||
Sbjct 1124921 CAGGAATAAGCCCTCA-GACCGACGCATCATCATGTCGGCTTGGAATCCGCTGGACATCC 1124863
Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGC---GAAT---G 34625
| |||||| || || ||||||||| | | || || |||||| | ||| |
Sbjct 1124862 CAAAGATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCG 1124803
Query 34626 GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCA 34685
| |||||||| |||||||| || || || | |||||||| | || || || || |
Sbjct 1124802 GTGAGCTGTCGTGCCAGCTGTACCAGAGAAGCGCCGACATGGGCCTGGGCGTACCCTTTA 1124743
Query 34686 ACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTG 34745
|||| || ||||| |||||||| ||||||| || ||||| ||| || || |
Sbjct 1124742 ACATCGCCTCCTACGCCCTGCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGCCGG 1124683
Query 34746 GGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCC 34805
| || | || || || |||| ||| | || |||||||||||||| | |||| |||
Sbjct 1124682 GCGACTTTGTTCACACCATGGGCGATACACACGTCTACCTGAACCACGTAGAGCCGCTGA 1124623
Query 34806 GGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTA 34853
| || ||||| || || ||||| || ||| |||| | ||||
Sbjct 1124622 AGGAGCAACTGCAGCGCACACCGCGACCCTTTCCCAAGCTGATCATTA 1124575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448179858082320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |