Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1553 212 6e-50 >seq1553 Length=5866729 Score = 212 bits (234), Expect = 6e-50 Identities = 474/708 (67%), Gaps = 8/708 (1%) Strand=Plus/Plus Query 6492 TAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGA 6551 |||| | |||| ||| || ||||| || || ||||| || | ||| |||| | Sbjct 1124575 TAATGATCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGTTGCTCCTTCAGCGGCTCTA 1124634 Query 6552 TGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACC 6611 |||||||||||||| || | ||| |||| || || || | || || || || | Sbjct 1124635 CGTGGTTCAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGAC 1124694 Query 6612 CCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCC 6671 || ||||| || ||||||| |||||||| ||||| || ||||| || || || | Sbjct 1124695 CCGTCACATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTAAAGGGTACGC 1124754 Query 6672 CTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC---ATTC---G 6725 | | |||||||| | || || || |||||||| |||||||| || ||| | Sbjct 1124755 CCAGGCCCATGTCGGCGCTTCTCTGGTACAGCTGGCACGACAGCTCACCGCGCTTCTCGG 1124814 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 |||||| || || | | ||||||||| || || |||||| |||| ||| || Sbjct 1124815 AGACGTAAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCG 1124874 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGG-TTCCGCTTCAAGGTGTCGATC 6844 | ||||| || |||| | ||| | || ||| | |||| || | | | |||||||||| Sbjct 1124875 GATTCCAAGCCGACATGATGATGCGTCGGTC-TGAGGGCTTATTCCTGATGGTGTCGATC 1124933 Query 6845 ACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCC 6904 || | |||||||||| |||| || |||| | |||| | |||| | Sbjct 1124934 ACTTGGCGCAGCTGGTCGATGCCCTTGCCGCTGTAGTTATCGTCGCAGGTGCCGTACTGC 1124993 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 ||||| || || ||||||||||| ||||| |||||||||| ||||| | | || Sbjct 1124994 GCCCCGAAATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGACTCGGCCC 1125053 Query 6965 GGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024 | ||||||| ||||||||| || |||| || | || | |||||||| | ||| | Sbjct 1125054 GTGAACCCCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTC 1125113 Query 7025 CGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACC 7084 | | ||| |||| || ||| || ||||||||||||||||||||| || Sbjct 1125114 TTCGCCTGCAGCAGTTTGGCGTCCGTCTTGCCTGCCACGAACCACAGCAGCTCCTCTGCC 1125173 Query 7085 ACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTAT 7144 || | || | ||||| ||||| ||||| || ||||| | ||| | || | | Sbjct 1125174 ACCGCGCGGAAGAAGACACGCTTCGTGGTCAGGAGGGGAAAGGAGTTCCGCATGTCGAAG 1125233 Query 7145 CGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCC 7192 || ||| ||||||||||||| || || ||| | | || |||||| Sbjct 1125234 CGCATCTGACTGCCGAACACGGACAGAGTGCCCACCTCCGTGCGGTCC 1125281 Score = 212 bits (234), Expect = 6e-50 Identities = 474/708 (67%), Gaps = 8/708 (1%) Strand=Plus/Minus Query 34153 GGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCG 34212 |||||| || | | ||| || || ||||||||||||| ||| || | | || | || Sbjct 1125281 GGACCGCACGGAGGTGGGCACTCTGTCCGTGTTCGGCAGTCAGATGCGCTTCGACATGCG 1125222 Query 34213 GGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCT 34272 | | ||||| || ||||| ||||| ||||| | || | |||| |||||||| Sbjct 1125221 GAACTCCTTTCCCCTCCTGACCACGAAGCGTGTCTTCTTCCGCGCGGTGGCAGAGGAGCT 1125162 Query 34273 GCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGAT 34332 ||||||||||||| || ||| || |||| ||| | | | ||| | || Sbjct 1125161 GCTGTGGTTCGTGGCAGGCAAGACGGACGCCAAACTGCTGCAGGCGAAGAATGTGCACAT 1125102 Query 34333 CTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGA 34392 |||||| | || | || |||| || ||||||||| ||||||| | || | | Sbjct 1125101 CTGGGATGGGAACAGCTCCAGAGAATTCCTGGACAAGATGGGGTTCACGGGCCGAGTCGT 1125042 Query 34393 GGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGG 34452 ||||| |||||||||| ||||| ||||||||||| || || |||||| |||| | Sbjct 1125041 TGGCGATCTGGGCCCGGTGTACGGCTTCCAGTGGAGGCATTTCGGGGCGCAGTACGGCAC 1124982 Query 34453 GAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT 34512 |||| | |||| || |||| |||||||||| | |||||||||||| | Sbjct 1124981 CTGCGACGATAACTACAGCGGCAAGGGCATCGACCAGCTGCGCCAAGTGATCGACACCAT 1124922 Query 34513 GAAGCGGAA-CCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCC 34571 | | || |||| | ||| || | ||| | |||| || ||||| ||| ||| ||| Sbjct 1124921 CAGGAATAAGCCCTCA-GACCGACGCATCATCATGTCGGCTTGGAATCCGCTGGACATCC 1124863 Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGC---GAAT---G 34625 | |||||| || || ||||||||| | | || || |||||| | ||| | Sbjct 1124862 CAAAGATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCG 1124803 Query 34626 GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCA 34685 | |||||||| |||||||| || || || | |||||||| | || || || || | Sbjct 1124802 GTGAGCTGTCGTGCCAGCTGTACCAGAGAAGCGCCGACATGGGCCTGGGCGTACCCTTTA 1124743 Query 34686 ACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTG 34745 |||| || ||||| |||||||| ||||||| || ||||| ||| || || | Sbjct 1124742 ACATCGCCTCCTACGCCCTGCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGCCGG 1124683 Query 34746 GGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCC 34805 | || | || || || |||| ||| | || |||||||||||||| | |||| ||| Sbjct 1124682 GCGACTTTGTTCACACCATGGGCGATACACACGTCTACCTGAACCACGTAGAGCCGCTGA 1124623 Query 34806 GGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTA 34853 | || ||||| || || ||||| || ||| |||| | |||| Sbjct 1124622 AGGAGCAACTGCAGCGCACACCGCGACCCTTTCCCAAGCTGATCATTA 1124575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448179858082320