Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1553 91.5 1e-13 >seq1553 Length=5866729 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 118465 TTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCA 118524 ||||| ||||| | ||| |||| ||||| || | ||| || || || || | || || Sbjct 1124622 TTCAGCGGCTCTACGTGGTTCAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCG 1124681 Query 118525 CCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACA 118584 || || | || || |||| || |||||||||| || | || |||| ||| | Sbjct 1124682 CCCGGCTTCAGACCCGTCACATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATG 1124741 Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || || ||||| |||||||| || ||||||||||| ||||| || ||||| Sbjct 1124742 TTAAAGGGTACGCCCAGGCCCATGTCGGCGCTTCTCTGGTACAGCTGGCACGACAGCTCA 1124801 Query 118645 CCG 118647 ||| Sbjct 1124802 CCG 1124804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414402387296284