Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq1556 89.7 4e-13
seq1554 84.2 2e-11
>seq1556
Length=7591821
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || | || || || || || ||||||||
Sbjct 3893338 GACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATCTTCGCTGGCAAGCAATTGGAA 3893279
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||||| | ||||||||||||||||||| || ||| || | ||||||||| |
Sbjct 3893278 GACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCAACCCTCCATTTGGTTCTC 3893219
Query 28003 CGTTTGCGTGGCGG 28016
||| ||||||| ||
Sbjct 3893218 CGTCTGCGTGGTGG 3893205
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || | || || || || || ||||||||
Sbjct 3894022 GACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATCTTCGCTGGCAAGCAATTGGAA 3893963
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||||| | ||||||||||||||||||| || ||| || | ||||||||| |
Sbjct 3893962 GACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCAACCCTCCATTTGGTTCTC 3893903
Query 28003 CGTTTGCGTGGCGG 28016
||| ||||||| ||
Sbjct 3893902 CGTCTGCGTGGTGG 3893889
Score = 82.4 bits (90), Expect = 5e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| ||||| || | || || ||||| || ||| |||| |||| ||||| | ||||||||
Sbjct 3893089 GATCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGAT 3893030
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||| || ||| || | || |||||| | ||| ||||||| ||
Sbjct 3893029 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 3892977
Score = 82.4 bits (90), Expect = 5e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| ||||| || | || || ||||| || ||| |||| |||| ||||| | ||||||||
Sbjct 3893545 GATCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGAT 3893486
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||| || ||| || | || |||||| | ||| ||||||| ||
Sbjct 3893485 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 3893433
>seq1554
Length=6179234
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| ||||| || || || || |||||||| || ||||| |||| ||||| |||||||
Sbjct 592433 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGACGCACTCTGTCCGAC 592492
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
||||||||||| || ||| || | |||||||| ||||| ||| ||| |||
Sbjct 592493 TACAACATCCAGAAGGAGTCGACCCTTCATTTGGTCCTGCGTCTGCTTGGTGGC 592546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355798510577637
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |