Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1556 89.7 4e-13 seq1554 84.2 2e-11 >seq1556 Length=7591821 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || | || || || || || |||||||| Sbjct 3893338 GACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATCTTCGCTGGCAAGCAATTGGAA 3893279 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | ||||||||||||||||||| || ||| || | ||||||||| | Sbjct 3893278 GACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCAACCCTCCATTTGGTTCTC 3893219 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 3893218 CGTCTGCGTGGTGG 3893205 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || | || || || || || |||||||| Sbjct 3894022 GACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATCTTCGCTGGCAAGCAATTGGAA 3893963 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | ||||||||||||||||||| || ||| || | ||||||||| | Sbjct 3893962 GACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCAACCCTCCATTTGGTTCTC 3893903 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 3893902 CGTCTGCGTGGTGG 3893889 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || || ||||| || ||| |||| |||| ||||| | |||||||| Sbjct 3893089 GATCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGAT 3893030 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 3893029 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 3892977 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || || ||||| || ||| |||| |||| ||||| | |||||||| Sbjct 3893545 GATCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGAT 3893486 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 3893485 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 3893433 >seq1554 Length=6179234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || ||||| |||| ||||| ||||||| Sbjct 592433 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGACGCACTCTGTCCGAC 592492 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| || | |||||||| ||||| ||| ||| ||| Sbjct 592493 TACAACATCCAGAAGGAGTCGACCCTTCATTTGGTCCTGCGTCTGCTTGGTGGC 592546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355798510577637