Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1555 185 2e-41 seq1556 167 5e-36 seq1554 143 6e-29 seq1553 143 6e-29 >seq1555 Length=7220098 Score = 185 bits (204), Expect = 2e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || || |||||||| || | ||||| | |||||| Sbjct 5837929 AGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCT 5837870 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || ||||||| |||||| |||||| Sbjct 5837869 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 5837810 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || |||||||| || || || ||| ||||| |||||||| ||| Sbjct 5837809 TGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTC 5837750 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || | |||||| || Sbjct 5837749 TTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 5837715 >seq1556 Length=7591821 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || ||||| || |||||||| ||||||| ||||| | |||||| Sbjct 3895272 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGTCCATCC 3895331 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || || || || |||| ||| ||||| ||| Sbjct 3895332 TCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCC 3895391 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || || ||||||||||| || |||||||| ||||| ||| Sbjct 3895392 TGAATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCTACCTCGAGGGTGATGGTC 3895451 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || | ||||| ||||| | ||||||||| Sbjct 3895452 TTTCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 3895486 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || ||||| || |||||||| ||||| | ||||| | ||| ||| Sbjct 3892992 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCT 3893051 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| |||||||| |||||||| || || || || || || | | ||| ||||| ||| Sbjct 3893052 TCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGAGATTCCCTCCTTATCC 3893111 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| || ||| ||||| |||||||| ||| Sbjct 3893112 TGAATCTTAGCCTTAACATTCTCGATGGTGTCCGACGGTTCTACCTCAAGAGTGATGGTC 3893171 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | |||||| || || | |||||| Sbjct 3893172 TTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3893203 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || ||||| || |||||||| ||||| | ||||| | ||| || Sbjct 3893676 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCC 3893735 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || || || || || | ||| ||||| ||| Sbjct 3893736 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCC 3893795 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| || ||| ||||| || |||| ||| Sbjct 3893796 TGAATCTTAGCCTTAACATTCTCGATGGTGTCCGACGGTTCTACCTCAAGGTTGATGGTC 3893855 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | |||||| || || | |||||| Sbjct 3893856 TTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3893887 >seq1554 Length=6179234 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || ||||| || |||||||| || || | || || | ||| || Sbjct 592758 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 592699 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | || || || || || || | ||||||||||||| Sbjct 592698 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCC 592639 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || ||||| || || ||||| || | ||||| ||| Sbjct 592638 TGGATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTC 592579 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 592578 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 592547 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||| || ||||| || |||||||| || || | || || | ||| || Sbjct 592530 AGGACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 592471 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| | || || || || || || | ||| ||||||||| Sbjct 592470 TCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCC 592411 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| || || |||||||| | |||||| ||| Sbjct 592410 TGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTC 592351 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || |||||||| || || | ||||| || Sbjct 592350 TTGCCGGTCAGAGTCTTAACGAAAATTTGCATATT 592316 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || ||||| || |||||||| || || | || || | ||| || Sbjct 592986 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 592927 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | || || || || || || | ||| ||||||||| Sbjct 592926 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCC 592867 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || ||||| || || ||||| || | ||||| ||| Sbjct 592866 TGGATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTC 592807 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 592806 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 592775 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || ||||| || |||||||| || || | || || | ||| || Sbjct 593214 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 593155 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | || || || || || || | ||| ||||||||| Sbjct 593154 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCC 593095 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||| || || ||||| || | ||||| ||| Sbjct 593094 TGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTC 593035 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 593034 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 593003 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/127 (76%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTT-TGGATGTTATAATCCGCAAGGGTCCTTCCATCTT 210963 ||| | |||||| || ||||| || |||||||| || || | || || | ||| || | Sbjct 594281 GACCAAGTGAAGGGTCGACTCCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCT 594222 Query 210964 CCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCT 211023 |||||||||| || |||||||| | || || || || || |||| ||| ||| |||||| Sbjct 594221 CCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAA-TCCCTCC-TGTCCT 594164 Query 211024 GGATCTT 211030 ||||||| Sbjct 594163 GGATCTT 594157 >seq1553 Length=5866729 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||| || | ||||| Sbjct 2325470 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 2325411 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || |||| || ||||| ||| Sbjct 2325410 TCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCC 2325351 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||||| || ||||| | ||||| ||| Sbjct 2325350 TGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTC 2325291 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || || | |||||| Sbjct 2325290 TTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 2325259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158933220564815