Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1553 87.8 2e-12 >seq1553 Length=5866729 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || || ||| || || || || || |||| ||| || || | Sbjct 2325474 GCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCC 2325415 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| |||||||| || || ||||||||||| || | ||| | || ||| || Sbjct 2325414 ATCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTT 2325355 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| || |||| || | | || || | |||||| |||| ||||| Sbjct 2325354 ATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGAT 2325295 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || ||||| || ||||| ||||| Sbjct 2325294 GGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 2325259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429468481933403