Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1556 125 5e-24 seq1555 122 6e-23 seq1553 84.2 1e-11 >seq1556 Length=7591821 Score = 125 bits (138), Expect = 5e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || |||||| | || ||||| | || Sbjct 3892975 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3892916 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || || || || || | || |||||||| Sbjct 3892915 GACACCATTGAGAATGTGAAGGCTAAGA-TTCAGGATAAGGAGGGAATCCCCCCAGATCA 3892857 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| | ||||||||| Sbjct 3892856 GCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTTTCCGATTACAA 3892797 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 3892796 CATCCAGAAGGAGTCGAC 3892779 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || |||||| | || ||||| | || Sbjct 3893431 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3893372 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||| | ||||| || || | || |||||||| Sbjct 3893371 GACACCATTGAGAATGTGAAGGCTAAAA-TCCAAGACAAGGAGGGAATTCCCCCAGATCA 3893313 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| ||| ||||||||| |||||| | ||||||||| Sbjct 3893312 GCAGCGTCTGATCTTCGCTGGCAAGCAATTGGAAGACGGACGCACCCTGTCCGATTACAA 3893253 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | ||||| ||| Sbjct 3893252 CATCCAGAAGGAGTCAACCCTCCATTTGGTT 3893222 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || |||||| | || ||||| | || Sbjct 3893659 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3893600 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || || || || || | || |||||||| Sbjct 3893599 GACACCATTGAGAATGTGAAGGCTAAGA-TTCAGGATAAGGAGGGAATCCCCCCAGATCA 3893541 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| | ||||||||| Sbjct 3893540 GCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 3893481 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 3893480 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 3893450 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || |||||| | || ||||| | || Sbjct 3894115 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3894056 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||| | ||||| || || | || |||||||| Sbjct 3894055 GACACCATTGAGAATGTGAAGGCTAAAA-TCCAAGACAAGGAGGGAATTCCCCCAGATCA 3893997 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| ||| ||||||||| |||||| | ||||||||| Sbjct 3893996 GCAGCGTCTGATCTTCGCTGGCAAGCAATTGGAAGACGGACGCACCCTGTCCGATTACAA 3893937 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | ||||| ||| Sbjct 3893936 CATCCAGAAGGAGTCAACCCTCCATTTGGTT 3893906 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || |||||| | || ||||| | || Sbjct 3894571 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3894512 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 3894511 GACACCATTGAGAATGTGAAGGCTAAGA-TCCAAGACAAGGAGGGCATCCCCCCAGATCA 3894453 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||||||||||||||| |||| |||||| | ||||||||| Sbjct 3894452 GCAGCGTCTCATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTTTCCGATTACAA 3894393 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 3894392 CATTCAGAAGGAGTCGACCCTTCACTTGGTT 3894362 Score = 125 bits (138), Expect = 5e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || |||||| | || ||||| | || Sbjct 3895027 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3894968 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || || || || || | || |||||||| Sbjct 3894967 GACACCATTGAGAATGTGAAGGCTAAGA-TTCAGGATAAGGAGGGAATCCCCCCAGATCA 3894909 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||||||||||||||| |||| |||||| | ||||||||| Sbjct 3894908 GCAGCGTCTCATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTTTCCGATTACAA 3894849 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 3894848 CATCCAGAAGGAGTCGAC 3894831 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || |||||| | || ||||| | || Sbjct 3895255 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3895196 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 3895195 GACACCATTGAGAATGTGAAGGCTAAGA-TCCAAGACAAGGAGGGCATCCCCCCAGATCA 3895137 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||||||||||||||| |||| |||||| | ||||||||| Sbjct 3895136 GCAGCGTCTCATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTTTCCGATTACAA 3895077 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 3895076 CATTCAGAAGGAGTCGACCCTTCACTTGGTT 3895046 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || |||||| | || ||||| | || Sbjct 3894343 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3894284 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || || || || || | || |||||||| Sbjct 3894283 GACACCATTGAGAATGTGAAGGCTAAGA-TTCAGGATAAGGAGGGAATCCCCCCAGATCA 3894225 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| |||||||| |||| |||||| | ||||||||| Sbjct 3894224 GCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAGGACGGACGCACCCTTTCCGATTACAA 3894165 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 3894164 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 3894134 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || |||||||| || || || | || Sbjct 3893203 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACTCTTGAGGTAGAACCGTCG 3893144 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || | || || || || || | | |||||||| Sbjct 3893143 GACACCATCGAGAATGTTAAGGCTAAGA-TTCAGGATAAGGAGGGAATCTCCCCAGATCA 3893085 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| | ||||||||| Sbjct 3893084 GCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 3893025 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 3893024 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 3892994 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||| | || ||||| || ||||| ||||| || || | Sbjct 3895486 AAAATGCAGATCTTTGTGAAGACCTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCG 3895427 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| |||| | || | || || || || || | || ||||| Sbjct 3895426 TCTGACACCATTGAGAATGTTAAGGCTAAGA-TTCAGGATAAGGAGGGAATTCCCCCAGA 3895368 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || ||||| || || || || || | |||||| | ||||| Sbjct 3895367 TCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCCTGTCGGATTA 3895308 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| || || ||||| || | || || ||| | | |||||||||| Sbjct 3895307 CAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTGCGTCTGCGAGGAGG 3895257 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || |||| || || || || | || Sbjct 3893887 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCAACCTTGAGGTAGAACCGTCG 3893828 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || | || || || || || | || |||||||| Sbjct 3893827 GACACCATCGAGAATGTTAAGGCTAAGA-TTCAGGATAAGGAGGGAATCCCCCCAGATCA 3893769 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || |||| |||||| | ||||||||| Sbjct 3893768 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGACGCACCCTGTCCGATTACAA 3893709 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 3893708 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 3893678 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| ||||| || || | | Sbjct 3894799 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACTATCACCCTCGAGGTAGAGCCTTCT 3894740 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | || | || || || || || | || |||||||| Sbjct 3894739 GATACCATTGAGAATGTTAAGGCTAAGA-TTCAGGATAAGGAGGGAATTCCCCCAGATCA 3894681 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || || || || | |||||| | |||||||| Sbjct 3894680 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCCTGTCGGATTACAA 3894621 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | || || ||| | | |||||||||| Sbjct 3894620 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCTGCGTCTGCGAGGAGG 3894573 >seq1555 Length=7220098 Score = 122 bits (134), Expect = 6e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||||||||||| || || |||||||| || || || | Sbjct 5837715 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 5837774 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| ||| | |||| | ||| || ||| ||||||||||| | || |||||| Sbjct 5837775 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 5837834 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||| || |||||||| | ||||| | || || Sbjct 5837835 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 5837894 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 5837895 AACATTCAGAAGGAGTCCAC 5837914 >seq1553 Length=5866729 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || ||||| | || || || | | Sbjct 2325259 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 2325318 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || || || || || | || |||||||| Sbjct 2325319 GACACCATCGAGAATGTCAAGGC-TAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCA 2325377 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| || ||||| || | |||||| | ||| ||||| Sbjct 2325378 GCAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCCGACTACAA 2325437 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 2325438 CATCCAGAAGGAGTCGAC 2325455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337948915763348