Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq1553 237 1e-57
>seq1553
Length=5866729
Score = 237 bits (262), Expect = 1e-57
Identities = 428/634 (68%), Gaps = 6/634 (1%)
Strand=Plus/Plus
Query 29604 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGT 29663
|||| |||||||||||| || | || || || | ||||||| || |||||||
Sbjct 1124581 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGTTGCTCCTTCAGCGGCTCTACGTGGT 1124640
Query 29664 CAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29723
||||||||||| | ||| |||| |||||| ||||| || ||||| | || || || |
Sbjct 1124641 TCAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 1124700
Query 29724 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCC 29783
| || || ||||||| ||||| || | |||| ||||||||||||||| || || || |
Sbjct 1124701 CATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTAAAGGGTACGCCCAGGC 1124760
Query 29784 CCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG------TCGCTCACGT 29837
||||||| | |||||||| ||||||||||| ||||| ||| ||| ||||
Sbjct 1124761 CCATGTCGGCGCTTCTCTGGTACAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACGT 1124820
Query 29838 AAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCC 29897
||||||| || | |||||||| || |||||||| | ||| || ||||
Sbjct 1124821 AAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCC 1124880
Query 29898 AGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTT 29957
| || ||| ||||||||| | |||| || || ||||||||| ||| | | |
Sbjct 1124881 AAGCCGACATGATGATGCGTCGGTCTGAGGGCTTATTCCTGATGGTGTCGATCACTTGGC 1124940
Query 29958 GCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGA 30017
||||||| || | ||| | || ||||| |||
Sbjct 1124941 GCAGCTGGTCGATGCCCTTGCCGCTGTAGTTATCGTCGCAGGTGCCGTACTGCGCCCCGA 1125000
Query 30018 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 30077
|||||||||||||||| ||||||||||| ||||| || || | | | | | ||| |
Sbjct 1125001 AATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGACTCGGCCCGTGAACC 1125060
Query 30078 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 30137
|| ||||||||| || |||||||| | ||| | |||||||| | || |||| |
Sbjct 1125061 CCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCCT 1125120
Query 30138 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 30197
||| ||||| || || ||| |||||||||||||||||||| | || ||
Sbjct 1125121 GCAGCAGTTTGGCGTCCGTCTTGCCTGCCACGAACCACAGCAGCTCCTCTGCCACCGCGC 1125180
Query 30198 TCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231
| ||||| | ||| || || |||||||||||
Sbjct 1125181 GGAAGAAGACACGCTTCGTGGTCAGGAGGGGAAA 1125214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406090279870666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |