Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1553 237 1e-57 >seq1553 Length=5866729 Score = 237 bits (262), Expect = 1e-57 Identities = 428/634 (68%), Gaps = 6/634 (1%) Strand=Plus/Plus Query 29604 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGT 29663 |||| |||||||||||| || | || || || | ||||||| || ||||||| Sbjct 1124581 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGTTGCTCCTTCAGCGGCTCTACGTGGT 1124640 Query 29664 CAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29723 ||||||||||| | ||| |||| |||||| ||||| || ||||| | || || || | Sbjct 1124641 TCAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 1124700 Query 29724 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCC 29783 | || || ||||||| ||||| || | |||| ||||||||||||||| || || || | Sbjct 1124701 CATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTAAAGGGTACGCCCAGGC 1124760 Query 29784 CCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG------TCGCTCACGT 29837 ||||||| | |||||||| ||||||||||| ||||| ||| ||| |||| Sbjct 1124761 CCATGTCGGCGCTTCTCTGGTACAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACGT 1124820 Query 29838 AAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCC 29897 ||||||| || | |||||||| || |||||||| | ||| || |||| Sbjct 1124821 AAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCC 1124880 Query 29898 AGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTT 29957 | || ||| ||||||||| | |||| || || ||||||||| ||| | | | Sbjct 1124881 AAGCCGACATGATGATGCGTCGGTCTGAGGGCTTATTCCTGATGGTGTCGATCACTTGGC 1124940 Query 29958 GCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGA 30017 ||||||| || | ||| | || ||||| ||| Sbjct 1124941 GCAGCTGGTCGATGCCCTTGCCGCTGTAGTTATCGTCGCAGGTGCCGTACTGCGCCCCGA 1125000 Query 30018 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 30077 |||||||||||||||| ||||||||||| ||||| || || | | | | | ||| | Sbjct 1125001 AATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGACTCGGCCCGTGAACC 1125060 Query 30078 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 30137 || ||||||||| || |||||||| | ||| | |||||||| | || |||| | Sbjct 1125061 CCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCCT 1125120 Query 30138 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 30197 ||| ||||| || || ||| |||||||||||||||||||| | || || Sbjct 1125121 GCAGCAGTTTGGCGTCCGTCTTGCCTGCCACGAACCACAGCAGCTCCTCTGCCACCGCGC 1125180 Query 30198 TCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 | ||||| | ||| || || ||||||||||| Sbjct 1125181 GGAAGAAGACACGCTTCGTGGTCAGGAGGGGAAA 1125214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406090279870666