Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq1553 268 7e-67
>seq1553
Length=5866729
Score = 268 bits (296), Expect = 7e-67
Identities = 444/637 (70%), Gaps = 12/637 (2%)
Strand=Plus/Plus
Query 27098 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGAT 27157
|||| |||||||||||| || | || || || ||||||||| || ||||| |
Sbjct 1124581 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGTTGCTCCTTCAGCGGCTCTACGTGGT 1124640
Query 27158 CCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 27217
|||||||||||| | || |||| |||||| ||||| || ||||| | || || || |
Sbjct 1124641 TCAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 1124700
Query 27218 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 27277
| || || ||||||| ||||| || | |||| |||||||||||||||||| || || |
Sbjct 1124701 CATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTAAAGGGTACGCCCAGGC 1124760
Query 27278 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT-------ACG 27330
||||||| | |||||||| ||||| ||||| ||||| || ||||| |||
Sbjct 1124761 CCATGTCGGCGCTTCTCTGGTACAGCTGGCACGACAGCTCACC-GCGCTTCTCGGAGACG 1124819
Query 27331 TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTC 27390
|||||||| | | ||||||||| || || ||||| | ||| || |||
Sbjct 1124820 TAAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTC 1124879
Query 27391 CAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTT 27450
|| || ||| ||||||||| | |||| || || ||||||||| ||| | | |
Sbjct 1124880 CAAGCCGACATGATGATGCGTCGGTCTGAGGGCTTATTCCTGATGGTGTCGATCACTTGG 1124939
Query 27451 TGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACC--CTCATGTCCGTGTACTCTGCTC 27508
||||||| || | ||| | || ||||| || | | || || | ||||| || |
Sbjct 1124940 CGCAGCTGGTCGATGCCCTTGCCGCTGTAGT-TATCGTCGCAGGTGC-CGTACTGCGCCC 1124997
Query 27509 CGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 27568
||||||||||||| ||||| ||||||||||| ||||| || || | | | | | ||
Sbjct 1124998 CGAAATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGACTCGGCCCGTGA 1125057
Query 27569 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 27628
| ||| ||||||||| || |||||||| | ||| | |||||||| | || ||||
Sbjct 1125058 ACCCCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCG 1125117
Query 27629 CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 27688
| ||| ||||| || || ||| |||||||||||||||||||| | || |
Sbjct 1125118 CCTGCAGCAGTTTGGCGTCCGTCTTGCCTGCCACGAACCACAGCAGCTCCTCTGCCACCG 1125177
Query 27689 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725
| | ||||| | ||| || || |||||||||||
Sbjct 1125178 CGCGGAAGAAGACACGCTTCGTGGTCAGGAGGGGAAA 1125214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369440860871261
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |