Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1553 268 7e-67 >seq1553 Length=5866729 Score = 268 bits (296), Expect = 7e-67 Identities = 444/637 (70%), Gaps = 12/637 (2%) Strand=Plus/Plus Query 27098 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGAT 27157 |||| |||||||||||| || | || || || ||||||||| || ||||| | Sbjct 1124581 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGTTGCTCCTTCAGCGGCTCTACGTGGT 1124640 Query 27158 CCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 27217 |||||||||||| | || |||| |||||| ||||| || ||||| | || || || | Sbjct 1124641 TCAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 1124700 Query 27218 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 27277 | || || ||||||| ||||| || | |||| |||||||||||||||||| || || | Sbjct 1124701 CATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTAAAGGGTACGCCCAGGC 1124760 Query 27278 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT-------ACG 27330 ||||||| | |||||||| ||||| ||||| ||||| || ||||| ||| Sbjct 1124761 CCATGTCGGCGCTTCTCTGGTACAGCTGGCACGACAGCTCACC-GCGCTTCTCGGAGACG 1124819 Query 27331 TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTC 27390 |||||||| | | ||||||||| || || ||||| | ||| || ||| Sbjct 1124820 TAAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTC 1124879 Query 27391 CAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTT 27450 || || ||| ||||||||| | |||| || || ||||||||| ||| | | | Sbjct 1124880 CAAGCCGACATGATGATGCGTCGGTCTGAGGGCTTATTCCTGATGGTGTCGATCACTTGG 1124939 Query 27451 TGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACC--CTCATGTCCGTGTACTCTGCTC 27508 ||||||| || | ||| | || ||||| || | | || || | ||||| || | Sbjct 1124940 CGCAGCTGGTCGATGCCCTTGCCGCTGTAGT-TATCGTCGCAGGTGC-CGTACTGCGCCC 1124997 Query 27509 CGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 27568 ||||||||||||| ||||| ||||||||||| ||||| || || | | | | | || Sbjct 1124998 CGAAATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGACTCGGCCCGTGA 1125057 Query 27569 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 27628 | ||| ||||||||| || |||||||| | ||| | |||||||| | || |||| Sbjct 1125058 ACCCCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCG 1125117 Query 27629 CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 27688 | ||| ||||| || || ||| |||||||||||||||||||| | || | Sbjct 1125118 CCTGCAGCAGTTTGGCGTCCGTCTTGCCTGCCACGAACCACAGCAGCTCCTCTGCCACCG 1125177 Query 27689 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 | | ||||| | ||| || || ||||||||||| Sbjct 1125178 CGCGGAAGAAGACACGCTTCGTGGTCAGGAGGGGAAA 1125214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369440860871261