Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1555 392 4e-104 >seq1555 Length=7220098 Score = 392 bits (434), Expect = 4e-104 Identities = 1206/1853 (65%), Gaps = 18/1853 (1%) Strand=Plus/Plus Query 76770 TTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829 ||||| | || || |||||||| | | | || || || || || ||||||||||| Sbjct 5750468 TTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATT 5750527 Query 76830 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTA 76889 || ||||| ||||| |||| ||| || || ||| ||||| || ||| | Sbjct 5750528 CCGGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTT 5750587 Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 || ||||| | ||| || || | ||||||||| ||||| ||||| || || | ||| || Sbjct 5750588 GGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCG 5750647 Query 76950 GCCATTTTTATAATGGTCTTT--TGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGA 77007 |||||||| || ||| ||| |||| |||||||| | || || | || | | Sbjct 5750648 GCCATTTTAATCGTGGACTTGACTGAG--ATTTCCCACACCGTCTT--ATACAGATCTCG 5750703 Query 77008 TATCATCTGG---AAGGTTTGTAT--TTTGAATGGAACCACCATCTG-ATATAATTGTAT 77061 | | ||||| | ||| | || ||||||| || || || ||| |||| || | Sbjct 5750704 CACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCC-CCTGCTGGATATGATCTGGT 5750762 Query 77062 TCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAA 77121 |||| || || || | |||||| | | ||| |||| | | | | |||| | || | Sbjct 5750763 TCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGA 5750822 Query 77122 CTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCA 77181 | | || ||||| || |||| |||| || ||||| || || |||| || || || | Sbjct 5750823 CCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGCTCGA 5750882 Query 77182 CAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATA 77241 ||||||||||| |||| || ||||| ||||| ||||| ||||| || || || | | Sbjct 5750883 AGGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACGAGCA 5750942 Query 77242 AACTATTTCTGAGACCATGTGTTCTGATTTTA-TCTTTTAGATATTTCCAATCCCAAAGA 77300 || | || ||| || |||| | | | || || | | | ||| ||||| || Sbjct 5750943 GGGAGTTCCGGACACCGTGC-TTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGG 5751001 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 | | || || ||||| | ||||| || | |||||| || || | || Sbjct 5751002 TTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCC 5751061 Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420 | || ||||| || | ||||| || | || ||||| || || |||||||| || || Sbjct 5751062 TCGTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 5751121 Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGA 77480 || ||||| |||||||| |||| || ||| | | ||||| || || |||| Sbjct 5751122 TAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCTTCGCTTTCGTACGGG 5751181 Query 77481 TAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGT 77540 || | | ||||| |||||||| || |||||||||| ||||| || | || | || Sbjct 5751182 AAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGC 5751241 Query 77541 CTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTG 77600 ||| |||||| | | || || || | |||||||| || || || || || || || Sbjct 5751242 CTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAATAGTTGATATCAATTATCTTGTTT 5751301 Query 77601 AGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTTC-CA 77657 |||||| | ||||| || || ||||| || || ||||||| | ||||| | Sbjct 5751302 AGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTAAAATCATACGTCTTCTCC 5751361 Query 77658 TCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCG 77717 | || |||||||| | || || || || | || || ||||| | ||||| | Sbjct 5751362 GGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGT 5751421 Query 77718 TTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGT 77777 || ||||| | || || || || | || || || ||||| ||||||| ||| || Sbjct 5751422 GAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTGC 5751481 Query 77778 TGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATC 77837 ||||||||||| | ||||| | |||||| | || || ||||| | ||||| || | Sbjct 5751482 TGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACT 5751541 Query 77838 TGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTC 77897 || | || || || | ||| | | | ||| || | | | ||| || | | Sbjct 5751542 TGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCCGACCC 5751601 Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||| || |||| || ||| ||| |||||||| ||||| || || | | ||| Sbjct 5751602 TCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCA 5751661 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || || | | |||||||| | ||||| ||||| | ||| ||| |||||||| ||| Sbjct 5751662 GGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGAAG 5751721 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTA 78077 ||||| |||||||| || || ||| ||||| || | | || ||||| || || || Sbjct 5751722 AGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTG 5751781 Query 78078 TTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCC 78137 ||||| || || || || ||||| | | ||| || ||||| ||||| | ||| || || Sbjct 5751782 TTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGGCA 5751841 Query 78138 ATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197 | | || || || || ||||||||||| | ||| | || ||||| | || Sbjct 5751842 AAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGACC 5751901 Query 78198 CTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTT 78257 |||| ||| |||| | || || || || |||||||| || |||| | | || || Sbjct 5751902 CTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTT 5751961 Query 78258 GCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAA 78317 || ||||| | | | | || || || || || ||| || || | ||||| Sbjct 5751962 GCACGAATGCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCAT 5752021 Query 78318 CGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAG 78377 ||| || | | | | || ||||| || ||| | ||||| | ||||| ||||| Sbjct 5752022 TGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACAC 5752081 Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 |||| || | | || | || ||| | ||| || ||||||||||| || Sbjct 5752082 GACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGTGAAG 5752141 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 | || || || ||||| || ||||| | || | || || ||| | ||| ||| Sbjct 5752142 TAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCCGCATCGATATCCTCTCCATGGATT 5752201 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 || | ||| || ||||||| ||||||||| |||| || | |||| ||| | || Sbjct 5752202 CCGATCGCAACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTCTTG 5752261 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 | | || || |||| || || || ||||||||||| || |||||| Sbjct 5752262 AGAAGATAGGAACGCTCCAGCGTCTTGAAGCCAAAATAGTTATAGCCAAAGTC 5752314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694540885423840