Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1555 383 2e-101 seq1557 136 6e-27 >seq1555 Length=7220098 Score = 383 bits (424), Expect = 2e-101 Identities = 1206/1858 (65%), Gaps = 28/1858 (2%) Strand=Plus/Plus Query 75365 TTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATA 75424 ||||| | || ||||||||||||| | | ||||| || || || ||||||||||| Sbjct 5750468 TTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATT 5750527 Query 75425 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTC 75484 || ||||| ||||| |||| ||| || || ||| || || || ||| | Sbjct 5750528 CCGGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTT 5750587 Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544 || ||||| | ||| || || | ||||||||| ||||| ||||| || || | ||| || Sbjct 5750588 GGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCG 5750647 Query 75545 GCCATTTTTATAATGGTCTTT--TGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGA 75602 |||||||| || ||| ||| |||| |||||||| | || || | || | | Sbjct 5750648 GCCATTTTAATCGTGGACTTGACTGAG--ATTTCCCACACCGTCTT--ATACAGATCTCG 5750703 Query 75603 TATCATCTGGAAGATTTG-----TATTTTGAATGGATCCGCCATCAGATATAATTGTATT 75657 | | ||||| ||| | |||||||| ||||| | ||||| || || Sbjct 5750704 CACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCCCCTGCTGGATATGATCTGGTT 5750763 Query 75658 CTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAAC 75717 ||| || || || | |||||| | |||||||| | | | | |||| | || || Sbjct 5750764 CTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 5750823 Query 75718 AATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCAC 75777 | || ||||| || |||| |||| || ||||| || || |||| || || || | Sbjct 5750824 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGCTCGAA 5750883 Query 75778 AGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAA 75837 ||||||||||| |||| || ||||| || || ||||| ||||| || || || | | Sbjct 5750884 GGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 5750943 Query 75838 ACTATTTCTGAGACCATGTGTTCTGATTTTA-TCTTTTAGATATTTCCAATCCCAAAGAT 75896 || | || ||| || |||| | | | || || | | | ||| ||||| || | Sbjct 5750944 GGAGTTCCGGACACCGTGC-TTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 5751002 Query 75897 CTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCAT 75956 | ||| || ||||| | ||||| || | |||||| ||||| | || | Sbjct 5751003 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 5751062 Query 75957 TATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGT 76016 || |||||||| | || || | | || |||||||| || || || || || || | Sbjct 5751063 CGTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCAT 5751122 Query 76017 AATAAATTGTTTCGAAAATCTTCTTATT---AAGATCTTGCGCTTCAAGACTATCAAAAG 76073 | ||||| |||||||| |||| || ||| |||| | ||||| || || | | Sbjct 5751123 AGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCG---GCTTCTTCGCTTTCGTACG 5751179 Query 76074 GATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133 | || | | ||||| || ||||| || | |||||||| ||||| || | || | | Sbjct 5751180 GGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGT 5751239 Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193 | ||| |||||| | || || || | || ||||| || ||||| || || || | Sbjct 5751240 GCCTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAATAGTTGATATCAATTATCTTGT 5751299 Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA----TTTT 76249 | |||||| || ||||| || || ||||| || || ||||||| | || | Sbjct 5751300 TTAGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTAAAATCATACGTCTTCT 5751359 Query 76250 CCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTA 76309 || | | || ||||| || || || || || || | || || || || | ||||| Sbjct 5751360 CCGGCG-TGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCC 5751418 Query 76310 GCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 | || ||||| | || |||||||| | || || |||||||| || || | ||| Sbjct 5751419 GGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTC 5751478 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429 || ||||||||||| |||| || | |||||| | || | ||||| |||| || || Sbjct 5751479 TGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCC 5751538 Query 76430 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGC 76489 | || | || || || | ||| | | | ||| || | | ||| || Sbjct 5751539 ACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCCGA 5751598 Query 76490 TTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 |||| || |||| || | | ||| |||||||| ||||| || || | | | Sbjct 5751599 CCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGA 5751658 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 |||||||| | | || ||||| | ||||| ||||| | ||| ||| |||||||| Sbjct 5751659 CCAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATG 5751718 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 |||||||| |||||||| || || ||| ||||| || | | | ||||| || || Sbjct 5751719 AAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCC 5751778 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 || ||||| || || || |||||||| | | ||| || ||||| ||||| | ||| || Sbjct 5751779 GTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATG 5751838 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | |||| || || || ||||||||||| | ||| | || ||||| | Sbjct 5751839 GCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAG 5751898 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 || |||| ||| |||| | || || || ||||||||||| || |||| | | || Sbjct 5751899 ACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCC 5751958 Query 76850 CATGCACGAAT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAG 76907 ||||||||| | | | | | || || || || || || || ||||| | | Sbjct 5751959 TTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCATGG 5752016 Query 76908 CACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAA 76967 | || ||| || | | | |||||||| || || | ||||| | ||||| | Sbjct 5752017 CGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGA 5752076 Query 76968 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAG 77027 |||| |||| || | | || | || ||||| ||| || |||||||| | Sbjct 5752077 AACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCG 5752136 Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGAT 77087 |||| | || || || ||||| || ||||| | | || || |||||| | || Sbjct 5752137 TGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCCGCATCGATATCCTCTCCAT 5752196 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 | ||||| | || || ||||||| ||||||||| ||||| ||| | |||| ||| Sbjct 5752197 GGATTCCGATCGCAACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTC 5752256 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 | || | | || || |||| || || || ||||||||||| || |||||| Sbjct 5752257 TCTTGAGAAGATAGGAACGCTCCAGCGTCTTGAAGCCAAAATAGTTATAGCCAAAGTC 5752314 >seq1557 Length=14215200 Score = 136 bits (150), Expect = 6e-27 Identities = 517/806 (64%), Gaps = 9/806 (1%) Strand=Plus/Plus Query 46360 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTA 46419 ||||||||||| || || || || |||| ||||| | ||||| || | ||| || || Sbjct 5421683 TTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCATCTCCATGAAGTTAAATGGGTTT 5421742 Query 46420 GTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCT 46479 | || || || ||| || || || || | || | || || ||||| || Sbjct 5421743 TTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGGTCCGCTACGAACTCA 5421802 Query 46480 ATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTA 46539 || ||| ||||| || |||||||| || || | ||||| || || || || || Sbjct 5421803 ATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTGACGGGCAGGGCATCGGTG 5421862 Query 46540 AGAAACTCTTGTTCAATAGTGACAGCAT--CCGATATTATCGATGTTACTGTTTCCTCAC 46597 || ||||| || || || | || || | | ||| | |||||| | | | | | | Sbjct 5421863 AGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTCGATGATGCGCT---CGCGC 5421919 Query 46598 TT-GGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCA 46656 || ||| | |||| || || | ||||| | ||||| || || || | ||| || Sbjct 5421920 TTGGGTCGCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTCGCAGTGCAAGCCCTCG 5421979 Query 46657 TCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGC 46716 || | | || | ||||| || || || | |||||||| || || ||||| || ||| Sbjct 5421980 TCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTTCTTAAGC 5422039 Query 46717 CAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACA 46776 || || || | ||||| || ||||| ||||| || || || || || |||| Sbjct 5422040 CAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCCCTCCACGGCGGCAAAGGCGATG 5422099 Query 46777 AGTCTCTCTCCGTAACTGGCATCATT--ATGA-ATCCACCTTTGAGCCCAATCAGCCTTT 46833 | | ||| ||| || |||| || |||| ||||| | ||||| || ||||| Sbjct 5422100 ATGCGCTCCCCGAAATTGGCCGACTTGGATGAGATCCAGGACAGGGCCCAGTCTGCCTTG 5422159 Query 46834 TTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCT 46893 ||| ||| ||||| ||||| ||||| || || || | | | | | ||| Sbjct 5422160 CGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCTCGCTGGTGTGGATCC 5422219 Query 46894 TTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATC 46953 | || || || || |||| ||| ||||| || || || | ||| || || || ||| Sbjct 5422220 CGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATC 5422279 Query 46954 TGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGAC 47013 || || ||||| || |||| ||| || || ||||| ||||| || || || || | Sbjct 5422280 TGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGAAGCGCTCCACC 5422339 Query 47014 AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAA 47073 | ||||| || || || |||||| || || || || |||| || || || ||| Sbjct 5422340 AGGTTCTCGTTTACGATGCCATCAGAGGCGGCGAAGAAGGCCAGCACGTGCGAGATGAAA 5422399 Query 47074 TATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 47133 | || ||| |||| | ||||||| | | || || || | ||| || || Sbjct 5422400 TGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAGGTCCTTGGACAAATCCACCTCC 5422459 Query 47134 TCAGCTGTCCAGAATGACGCCTCTGC 47159 || | |||||||| || ||||| || Sbjct 5422460 TCGACGGTCCAGAAAGAAGCCTCAGC 5422485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712803122041920