Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1555 131 2e-25 seq1553 122 8e-23 seq1556 116 3e-21 >seq1555 Length=7220098 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||||| ||| ||||||||||||||||||||| ||| Sbjct 5837944 CCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 5837885 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||| ||||| || || | ||| Sbjct 5837884 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 5837825 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||||| ||| | || |||| || | | ||| || || || || Sbjct 5837824 ATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGAC 5837766 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||||| || ||||| ||||| |||||||| || Sbjct 5837765 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 5837715 >seq1553 Length=5866729 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||||| || ||||||||| ||||| |||||||| Sbjct 2325485 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2325426 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| ||||| ||||| ||||| || || | |||| Sbjct 2325425 AGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGATCTGGGGGA 2325366 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||| ||| ||| || ||| | | | ||||| | ||||||| Sbjct 2325365 ATGCCCTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACC 2325306 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || || || ||||| |||||||| Sbjct 2325305 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 2325259 >seq1556 Length=7591821 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||| ||||| || ||||| Sbjct 3892749 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAA 3892808 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || |||||||||||||| || || ||||| || || | ||| Sbjct 3892809 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3892868 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || | ||||| | | ||||| | ||| || Sbjct 3892869 ATTCCCTCCTTATCC-TGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAAC 3892927 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| ||||| |||||||| Sbjct 3892928 CTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3892975 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||||||||| || ||||| Sbjct 3894345 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAA 3894404 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || || ||||||||||| || || ||||| || || | ||| Sbjct 3894405 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3894464 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||||| | | ||||| | ||| ||| Sbjct 3894465 ATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3894524 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| ||||| |||||||| Sbjct 3894525 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3894571 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||||||||| || ||||| Sbjct 3895029 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAA 3895088 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || || ||||||||||| || || ||||| || || | ||| Sbjct 3895089 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3895148 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||||| | | ||||| | ||| ||| Sbjct 3895149 ATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3895208 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| ||||| |||||||| Sbjct 3895209 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3895255 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| || ||||| Sbjct 3893433 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3893492 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || |||||||||||||| || || ||||| || || | ||| Sbjct 3893493 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3893552 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || | ||||| | | ||||| | ||| || Sbjct 3893553 ATTCCCTCCTTATCC-TGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAAC 3893611 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| ||||| |||||||| Sbjct 3893612 CTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3893659 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| || ||||| Sbjct 3893661 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3893720 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||||||||| ||||| ||||| || || | ||| Sbjct 3893721 AGGGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 3893780 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || || | ||| | | ||||| || || || Sbjct 3893781 ATTCCCTCCTTATCC-TGAATCTTAGCCTTAACATTCTCGATGGTGTCCGACGGTTCTAC 3893839 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | | || || || || |||| ||||| ||||| |||||||| Sbjct 3893840 CTCAAGGTTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3893887 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||| ||||| || ||||| Sbjct 3894801 CCTCCACGCAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAA 3894860 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || || ||||||||||| || || ||||| || || | ||| Sbjct 3894861 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3894920 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || | ||||| | | ||||| | ||| || Sbjct 3894921 ATTCCCTCCTTATCC-TGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAAC 3894979 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| ||||| |||||||| Sbjct 3894980 CTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3895027 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| || ||||| |||||||| |||| || || |||||||||||||| Sbjct 3894152 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCCAGTTGCTTGCCGGCGAA 3894211 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACG 41789 || || ||||| || || | ||| | | |||||| ||| ||| | || | ||||| Sbjct 3894212 GATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCC-TGAATCTTAGCCTTCACAT 3894270 Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | ||||| | ||| ||||||| || || || || || || || ||||| | Sbjct 3894271 TCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCA 3894330 Query 41850 CGAAAATCTGCAT 41862 |||| |||||||| Sbjct 3894331 CGAAGATCTGCAT 3894343 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| || ||||| Sbjct 3892977 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3893036 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || |||||||||||||| || || ||||| || || | || Sbjct 3893037 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGAG 3893096 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || || | ||| | | ||||| || || || Sbjct 3893097 ATTCCCTCCTTATCC-TGAATCTTAGCCTTAACATTCTCGATGGTGTCCGACGGTTCTAC 3893155 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| ||||| |||||||| Sbjct 3893156 CTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3893203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462218872497200