Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq71 127 4e-24
seq1339 93.3 9e-14
seq1345 91.5 3e-13
seq65 91.5 3e-13
seq10 91.5 3e-13
>seq71
Length=15183
Score = 127 bits (140), Expect = 4e-24
Identities = 259/381 (68%), Gaps = 4/381 (1%)
Strand=Plus/Minus
Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143
||| ||| ||||| ||||||||||| || || || || |||| || |||| ||||
Sbjct 4075 TTTATCAGGCATCTACATCTGAACTATACGGGTTGGTGCAGGAAACACCGCAAAAGGAAA 4016
Query 61144 GGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTT 61203
|| || || |||| || ||||| || | ||| || ||| | |||||||||||||||
Sbjct 4015 CAACACCTTTCCATCCGCGCAGCCCCTACGCTGTGGCTAAAATGTACGCTTACTGGATTA 3956
Query 61204 GTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACG 61263
||||||||| ||| | || | |||| || |||||| ||||| || || || |
Sbjct 3955 CCGTAAATTACCGTGAGGCTTACGATATGTATGCCTGTAACGGGATTTTGTTTAACCATG 3896
Query 61264 AGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATA 61323
| || || | | ||| | ||||| || || ||||||||| | | | || ||||
Sbjct 3895 AAAGCCCGCGTCGTGGTGAAACATTTGTAACACGCAAAATTACGCGTGGGCTGGCCAATA 3836
Query 61324 TTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGG 61383
|| | ||| | ||||||||| |||| | || || || || | | || ||||
Sbjct 3835 TTGCTGTTGGTCTGGAAAAATGCCTGTACATGGGGAATATCAACAGTCTGCGTGACTGGG 3776
Query 61384 GATATGCGGAAGATTATAT-CG-AGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGA 61441
| |||| ||||||| | || | || | ||| ||||| | |||||||| |||||
Sbjct 3775 GGCATGCAAAAGATTACGTGCGCATGCAA--TGGATGATGCTCCAACAAGAGCAGCCAGA 3718
Query 61442 TGACTACGTTATTGCGACTGG 61462
||| | || ||||| || ||
Sbjct 3717 TGATTTTGTAATTGCAACAGG 3697
>seq1339
Length=5788136
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 3732734 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 3732675
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 3732674 GCCCCACGTTGGGC 3732661
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 3755402 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 3755343
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 3755342 GCCCCACGTTGGGC 3755329
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 3074290 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3074349
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 3074350 CCCCACGTTGGGC 3074362
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 3074739 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3074798
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 3074799 CCCCACGTTGGGC 3074811
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 3075330 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3075389
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 3075390 CCCCACGTTGGGC 3075402
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 3746628 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3746687
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 3746688 CCCCACGTTGGGC 3746700
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 3781832 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3781891
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 3781892 CCCCACGTTGGGC 3781904
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 3754456 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3754515
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 3754516 CCCACGTTGGGC 3754527
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 3756755 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3756814
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 3756815 CCCACGTTGGGC 3756826
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 3757118 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3757177
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 3757178 CCCACGTTGGGC 3757189
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 3757717 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3757776
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 3757777 CCCACGTTGGGC 3757788
>seq1345
Length=2726482
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 1193226 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1193285
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 1193286 CCCCACGTTGGGC 1193298
>seq65
Length=2089918
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 512474 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 512415
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 512414 CCCCACGTTGGGC 512402
>seq10
Length=6880660
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 5476167 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 5476226
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 5476227 CCCCACGTTGGGC 5476239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057805621630280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |