Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq71 127 4e-24 seq1339 93.3 9e-14 seq1345 91.5 3e-13 seq65 91.5 3e-13 seq10 91.5 3e-13 >seq71 Length=15183 Score = 127 bits (140), Expect = 4e-24 Identities = 259/381 (68%), Gaps = 4/381 (1%) Strand=Plus/Minus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143 ||| ||| ||||| ||||||||||| || || || || |||| || |||| |||| Sbjct 4075 TTTATCAGGCATCTACATCTGAACTATACGGGTTGGTGCAGGAAACACCGCAAAAGGAAA 4016 Query 61144 GGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTT 61203 || || || |||| || ||||| || | ||| || ||| | ||||||||||||||| Sbjct 4015 CAACACCTTTCCATCCGCGCAGCCCCTACGCTGTGGCTAAAATGTACGCTTACTGGATTA 3956 Query 61204 GTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACG 61263 ||||||||| ||| | || | |||| || |||||| ||||| || || || | Sbjct 3955 CCGTAAATTACCGTGAGGCTTACGATATGTATGCCTGTAACGGGATTTTGTTTAACCATG 3896 Query 61264 AGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATA 61323 | || || | | ||| | ||||| || || ||||||||| | | | || |||| Sbjct 3895 AAAGCCCGCGTCGTGGTGAAACATTTGTAACACGCAAAATTACGCGTGGGCTGGCCAATA 3836 Query 61324 TTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGG 61383 || | ||| | ||||||||| |||| | || || || || | | || |||| Sbjct 3835 TTGCTGTTGGTCTGGAAAAATGCCTGTACATGGGGAATATCAACAGTCTGCGTGACTGGG 3776 Query 61384 GATATGCGGAAGATTATAT-CG-AGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGA 61441 | |||| ||||||| | || | || | ||| ||||| | |||||||| ||||| Sbjct 3775 GGCATGCAAAAGATTACGTGCGCATGCAA--TGGATGATGCTCCAACAAGAGCAGCCAGA 3718 Query 61442 TGACTACGTTATTGCGACTGG 61462 ||| | || ||||| || || Sbjct 3717 TGATTTTGTAATTGCAACAGG 3697 >seq1339 Length=5788136 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 3732734 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 3732675 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 3732674 GCCCCACGTTGGGC 3732661 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 3755402 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 3755343 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 3755342 GCCCCACGTTGGGC 3755329 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3074290 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3074349 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3074350 CCCCACGTTGGGC 3074362 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3074739 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3074798 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3074799 CCCCACGTTGGGC 3074811 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3075330 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3075389 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3075390 CCCCACGTTGGGC 3075402 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3746628 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3746687 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3746688 CCCCACGTTGGGC 3746700 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3781832 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3781891 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3781892 CCCCACGTTGGGC 3781904 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 3754456 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3754515 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3754516 CCCACGTTGGGC 3754527 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 3756755 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3756814 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3756815 CCCACGTTGGGC 3756826 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 3757118 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3757177 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3757178 CCCACGTTGGGC 3757189 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 3757717 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3757776 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3757777 CCCACGTTGGGC 3757788 >seq1345 Length=2726482 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1193226 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1193285 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1193286 CCCCACGTTGGGC 1193298 >seq65 Length=2089918 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 512474 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 512415 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 512414 CCCCACGTTGGGC 512402 >seq10 Length=6880660 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 5476167 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 5476226 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 5476227 CCCCACGTTGGGC 5476239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057805621630280