Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq185 161 1e-34 >seq185 Length=662383 Score = 161 bits (178), Expect = 1e-34 Identities = 540/830 (65%), Gaps = 18/830 (2%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| | ||||| |||| || || || |||||||| || ||||| || || Sbjct 113982 ACGCCCATGCGCTGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGC 114041 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTAC-CCC 16780 || || |||||||||| | || || || | | || | || |||| | || ||| Sbjct 114042 GAGATCATCTCCATGAAGTTGAACGGGTTCTTGGTGTTGTAGAT-TTTTCCA--ACGCCC 114098 Query 16781 AGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTC 16840 | ||| ||| | | ||| || ||||| || || || || |||||| ||||||||| Sbjct 114099 AACTCGACGAGCAGGCGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTC 114158 Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 || || || ||| || || || || || ||||| || || || || | || || Sbjct 114159 ATGCCGATCAGATTCACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCG 114218 Query 16901 TCCTTAATAATA-CTAGCAA---CTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAA 16956 || ||| || | | | |||| | ||| || || | ||||| | || Sbjct 114219 TCACGAATGATCTCGATGATGCGCTCGCGACGCGGTCGCTGCACC----AGATGCTGGAA 114274 Query 16957 CATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAA 17016 |||||| || || ||||| || | |||||||| | | ||| || ||||| || || Sbjct 114275 CATCAGCACCGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAA 114334 Query 17017 TGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGA 17076 |||| || |||||| || || ||||| | ||| || || | ||| || || Sbjct 114335 GGTCAGGCCAGGCATCAGGCCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCT 114394 Query 17077 AAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTT 17135 ||||| || |||||||||| ||||| || || | || || | | | || | ||| Sbjct 114395 GAAGAAGATGCCCTCGACGGCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTT 114454 Query 17136 TGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | | || ||||| | | |||| || ||||| |||| | ||| || || Sbjct 114455 GG--AGGAGATCCAGGACAGGGCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCG 114512 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| ||||| | | || | || | || || || || ||||| || | Sbjct 114513 ATGGCATTAAACAGGTAGTCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACA 114572 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||||| || || || | |||||||||||| ||||| || || || ||||| ||||| Sbjct 114573 CTGTACATCTCCGAATGGACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCC 114632 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | || || || ||| ||| || || | || || ||||| |||||||| ||| Sbjct 114633 TCTGTGATCTGCACCTCCTGACTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCG 114692 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 ||||| || ||||||| | ||| ||||||| |||||| |||| Sbjct 114693 GAGGCGGCAAAGAACGCCAGCACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGA 114752 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAA 17484 ||||||| ||||||| ||||| | |||||| ||||| ||||||||| Sbjct 114753 TGCCAGTCGGTTAAATCCTTGGACAGATCCACCTCTTCCACGGTCCAAAA 114802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517536827602080