Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq185 152 5e-32 seq59 100 3e-16 >seq185 Length=662383 Score = 152 bits (168), Expect = 5e-32 Identities = 464/710 (65%), Gaps = 18/710 (3%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTAC 16095 ||| || ||||| || || || || |||||| |||||| || || || || || || Sbjct 114116 ATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTCAC 114175 Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155 || || || | || || || | ||||| || | || || || |||||| ||| | Sbjct 114176 GGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTCGAT 114235 Query 16156 G----GCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGT 16211 | ||||| | | | || || | || || | ||||| || ||| |||| Sbjct 114236 GATGCGCTCGCGACGCGGTCGCTGCACC----AGATGCTGGAACATCAGCACCGCAAAGT 114291 Query 16212 CGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTT 16271 |||| || || || ||||| | | ||| || |||||||| || || | || ||||| Sbjct 114292 CGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCA 114351 Query 16272 TTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCTC 16329 || || ||||| | |||||| || | ||||| || | | ||| ||| || ||||| Sbjct 114352 GGCCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAA--GAAGATGCCCTC 114409 Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCATT 16388 || | ||||| || || | || || | | | ||| || | || ||||| Sbjct 114410 GACGGCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGG-AGGAGATCCAGG 114468 Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT 16448 | | |||| || ||||| | || | ||| || || ||||| ||||||| | Sbjct 114469 ACAGGGCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGT 114528 Query 16449 TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGT 16508 || | || ||| || || || || ||||| | ||||||||| || || | Sbjct 114529 AGTCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAAT 114588 Query 16509 GTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTT 16568 | | |||||| ||||| ||||| || ||||||||||| || ||||| | || || || | Sbjct 114589 GGACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCT 114648 Query 16569 CC--ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAA 16626 || || ||| || || |||||||||| || ||||| || || || ||||| || Sbjct 114649 CCTGACTGAAA--CGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAA 114706 Query 16627 CGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAA 16686 ||||| | || ||||||| ||||||| |||| |||||| || |||| Sbjct 114707 CGCCAGCACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAA 114766 Query 16687 ATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 ||| ||||| | |||||| ||||| ||||||||| ||| | |||| Sbjct 114767 ATCCTTGGACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGCCT 114816 >seq59 Length=1347070 Score = 100 bits (110), Expect = 3e-16 Identities = 182/261 (70%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| || ||||| ||||| | || ||||||||||| | | ||||||| || Sbjct 1330547 TTCATGTACCGAATCTTGCCAAAGATGGCCCGCTCCTTCCAGCCCATATCGTGGACGCCG 1330488 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054 | | | ||| | || ||||| || ||||| ||||| ||||| | ||| |||||| Sbjct 1330487 CCGATGGACCACATGCAACCCACATAGCCGTTTGGATCGCGCCCGTCCAGACT-GTACTT 1330429 Query 119055 ATCGTTTAAGTAGATACAGACG--CTTAA-CGCACTTTCCGGAGTCTTACTCCATTCCAG 119111 ||||| | | || | || || || ||| ||||| || |||||||| || Sbjct 1330428 GTCGTTCAGTAAAAT---GGCGTACTCAAGCGCCTGCTCCGGCGTGGGGCTCCATTCGAG 1330372 Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTG 119171 || ||||| ||||||||||| || | | |||||||| || |||||| || || ||| Sbjct 1330371 GATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGCCCTCGCGAACCAGCTG 1330312 Query 119172 AAGTTGTGCGGTGTTCCATAG 119192 | ||| || | |||||| || Sbjct 1330311 CAATTGCGCCGAGTTCCAGAG 1330291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511405731525920