Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq185 152 5e-32
seq59 100 3e-16
>seq185
Length=662383
Score = 152 bits (168), Expect = 5e-32
Identities = 464/710 (65%), Gaps = 18/710 (3%)
Strand=Plus/Plus
Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTAC 16095
||| || ||||| || || || || |||||| |||||| || || || || || ||
Sbjct 114116 ATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTCAC 114175
Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155
|| || || | || || || | ||||| || | || || || |||||| ||| |
Sbjct 114176 GGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTCGAT 114235
Query 16156 G----GCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGT 16211
| ||||| | | | || || | || || | ||||| || ||| ||||
Sbjct 114236 GATGCGCTCGCGACGCGGTCGCTGCACC----AGATGCTGGAACATCAGCACCGCAAAGT 114291
Query 16212 CGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTT 16271
|||| || || || ||||| | | ||| || |||||||| || || | || |||||
Sbjct 114292 CGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCA 114351
Query 16272 TTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCTC 16329
|| || ||||| | |||||| || | ||||| || | | ||| ||| || |||||
Sbjct 114352 GGCCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAA--GAAGATGCCCTC 114409
Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCATT 16388
|| | ||||| || || | || || | | | ||| || | || |||||
Sbjct 114410 GACGGCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGG-AGGAGATCCAGG 114468
Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT 16448
| | |||| || ||||| | || | ||| || || ||||| ||||||| |
Sbjct 114469 ACAGGGCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGT 114528
Query 16449 TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGT 16508
|| | || ||| || || || || ||||| | ||||||||| || || |
Sbjct 114529 AGTCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAAT 114588
Query 16509 GTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTT 16568
| | |||||| ||||| ||||| || ||||||||||| || ||||| | || || || |
Sbjct 114589 GGACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCT 114648
Query 16569 CC--ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAA 16626
|| || ||| || || |||||||||| || ||||| || || || ||||| ||
Sbjct 114649 CCTGACTGAAA--CGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAA 114706
Query 16627 CGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAA 16686
||||| | || ||||||| ||||||| |||| |||||| || ||||
Sbjct 114707 CGCCAGCACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAA 114766
Query 16687 ATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736
||| ||||| | |||||| ||||| ||||||||| ||| | ||||
Sbjct 114767 ATCCTTGGACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGCCT 114816
>seq59
Length=1347070
Score = 100 bits (110), Expect = 3e-16
Identities = 182/261 (70%), Gaps = 8/261 (3%)
Strand=Plus/Minus
Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995
|||||||| || ||||| ||||| | || ||||||||||| | | ||||||| ||
Sbjct 1330547 TTCATGTACCGAATCTTGCCAAAGATGGCCCGCTCCTTCCAGCCCATATCGTGGACGCCG 1330488
Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054
| | | ||| | || ||||| || ||||| ||||| ||||| | ||| ||||||
Sbjct 1330487 CCGATGGACCACATGCAACCCACATAGCCGTTTGGATCGCGCCCGTCCAGACT-GTACTT 1330429
Query 119055 ATCGTTTAAGTAGATACAGACG--CTTAA-CGCACTTTCCGGAGTCTTACTCCATTCCAG 119111
||||| | | || | || || || ||| ||||| || |||||||| ||
Sbjct 1330428 GTCGTTCAGTAAAAT---GGCGTACTCAAGCGCCTGCTCCGGCGTGGGGCTCCATTCGAG 1330372
Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTG 119171
|| ||||| ||||||||||| || | | |||||||| || |||||| || || |||
Sbjct 1330371 GATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGCCCTCGCGAACCAGCTG 1330312
Query 119172 AAGTTGTGCGGTGTTCCATAG 119192
| ||| || | |||||| ||
Sbjct 1330311 CAATTGCGCCGAGTTCCAGAG 1330291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511405731525920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |