Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 152 6e-32
>seq1170
Length=5152482
Score = 152 bits (168), Expect = 6e-32
Identities = 550/849 (65%), Gaps = 41/849 (5%)
Strand=Plus/Plus
Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596
|| || ||||| ||||| |||| | || ||| | ||| | | | | ||||||||
Sbjct 3758937 TAAACGGCCATTTCCATCTGGATTTTTGGGTAGGGATTGTAATCGACTATCTCAAAGTCC 3758996
Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGC 145656
|| | ||||| || ||||||| |||| | | |||| || | ||||| |
Sbjct 3758997 TCAAAGCGAAAGTCCTCAATGTCCTGCACCTTGCGCTTGATCACCAGTTTTGGAAACGTG 3759056
Query 145657 CGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCG 145716
|| || | | |||||| ||| || || ||||| ||||| |||||||| |||| |
Sbjct 3759057 CGCGGCGTGCGCTGCAGCTGCTCCTTTAGCGGGTCCACATGGTTTAGGTAGACATGCGTG 3759116
Query 145717 TCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG 145776
|| |||| | || | |||||| ||||| | || || || | ||||| | ||||| |
Sbjct 3759117 TCACCCATGGTATGAACGAAGTCGCCGGGTTTCAGACCAGTCACATGGGCTATCATGTGG 3759176
Query 145777 GTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGC 145836
|| ||||||| |||| || |||||||| || || ||||| ||||| || | | |
Sbjct 3759177 GTGAGCAGGGCGTAGGAAGCGATGTTGAAAGGTACGCCCAGGCCCATATCAGCGCTCCTC 3759236
Query 145837 TGGTACAGCTGGCAGGAGAGCTCCCC---GCCC---GCCACGTAGAACTGGCACAGGAGG 145890
||||||||||| ||||| || || || | || | ||| |||| || |||| |
Sbjct 3759237 TGGTACAGCTGACAGGACAGTTCGCCACGGTCCTGGGAGACGAAGAATTGCGCCAGGCAG 3759296
Query 145891 TGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGC 145950
||||| ||||||| ||||| || | |||| || ||||| || | | || |
Sbjct 3759297 TGGCATGGCGGCAATGCCATTTTTGGTATGTCCAGGGGATTCCATGCAGACATGATAATG 3759356
Query 145951 CTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCC 146010
| |||| | || || | || || | | |||| | | | |||||| | ||||
Sbjct 3759357 CGCCTGTCCGACGGATTGGTTTTTATTGTCTCGATCACCTGACGCAACTGGTCGATGCCC 3759416
Query 146011 TGCCCCCGGTAATCTGTC-TTGGA-GTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGA 146068
|| || | ||| || ||| ||| | |||| |||| | ||||| || |||| |||||| |
Sbjct 3759417 TGGCCGCTGTAGTC-GTCGTTGCACGTCC-GGTACTCTGCCCCAAAATGCCGCCACTGAA 3759474
Query 146069 ACCCGTAGACGGGCCCCAGGTC--------CCCGGGCTCCCTGTGCCCCAGCCCGGCCCG 146120
| ||||| || || |||| || ||||| ||| | || || ||| | ||
Sbjct 3759475 AGCCGTATACTGGACCCAAATCGCCAACAGCCCGG--TCCGTATGACCAAGCTTGTCC-- 3759530
Query 146121 GGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGC--GGA-GAG 146177
||||| |||| || | ||| ||||||| || | ||| | || | | |||
Sbjct 3759531 ----AGGAACTCCCTGGTGCTGTTCCCGTCCCATATGTGAACGTTTTTTGCCTGCAGGAG 3759586
Query 146178 CTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCA 146237
| |||| |||||| || || |||||| || | ||| ||| || | | |
Sbjct 3759587 C---TTGGCGTCCGTCTTGCCAGCGACGAACCATAGTAACTCCTCGGCCACAGCGCGGAA 3759643
Query 146238 GAAGACCCTCTTGGTGGTCAGCAGGGG---GAACTGGCCCCGCA---GGGAGTACTTGGC 146291
||| || | ||| || ||||||||||| | | | ||| |||| | || | |
Sbjct 3759644 GAACACACGCTTCGTTGTCAGCAGGGGAAAGGAGTCGCCACGCATATTGAAGCGCAT--- 3759700
Query 146292 CTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCCCCCCTGCGCACCCCGTT 146351
||| | ||||| || ||||| || ||||| || | |||| ||| || | |||||
Sbjct 3759701 TTGGGCGCCGAACACAGACAGTGTTCCCACCTGTGTGCGGTCCATCCTACGTTCTCCGTT 3759760
Query 146352 CGCCAGGAT 146360
||||| |||
Sbjct 3759761 CGCCATGAT 3759769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590066798198240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |