Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1170 152 6e-32 >seq1170 Length=5152482 Score = 152 bits (168), Expect = 6e-32 Identities = 550/849 (65%), Gaps = 41/849 (5%) Strand=Plus/Plus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || || ||||| ||||| |||| | || ||| | ||| | | | | |||||||| Sbjct 3758937 TAAACGGCCATTTCCATCTGGATTTTTGGGTAGGGATTGTAATCGACTATCTCAAAGTCC 3758996 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGC 145656 || | ||||| || ||||||| |||| | | |||| || | ||||| | Sbjct 3758997 TCAAAGCGAAAGTCCTCAATGTCCTGCACCTTGCGCTTGATCACCAGTTTTGGAAACGTG 3759056 Query 145657 CGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCG 145716 || || | | |||||| ||| || || ||||| ||||| |||||||| |||| | Sbjct 3759057 CGCGGCGTGCGCTGCAGCTGCTCCTTTAGCGGGTCCACATGGTTTAGGTAGACATGCGTG 3759116 Query 145717 TCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG 145776 || |||| | || | |||||| ||||| | || || || | ||||| | ||||| | Sbjct 3759117 TCACCCATGGTATGAACGAAGTCGCCGGGTTTCAGACCAGTCACATGGGCTATCATGTGG 3759176 Query 145777 GTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGC 145836 || ||||||| |||| || |||||||| || || ||||| ||||| || | | | Sbjct 3759177 GTGAGCAGGGCGTAGGAAGCGATGTTGAAAGGTACGCCCAGGCCCATATCAGCGCTCCTC 3759236 Query 145837 TGGTACAGCTGGCAGGAGAGCTCCCC---GCCC---GCCACGTAGAACTGGCACAGGAGG 145890 ||||||||||| ||||| || || || | || | ||| |||| || |||| | Sbjct 3759237 TGGTACAGCTGACAGGACAGTTCGCCACGGTCCTGGGAGACGAAGAATTGCGCCAGGCAG 3759296 Query 145891 TGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGC 145950 ||||| ||||||| ||||| || | |||| || ||||| || | | || | Sbjct 3759297 TGGCATGGCGGCAATGCCATTTTTGGTATGTCCAGGGGATTCCATGCAGACATGATAATG 3759356 Query 145951 CTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCC 146010 | |||| | || || | || || | | |||| | | | |||||| | |||| Sbjct 3759357 CGCCTGTCCGACGGATTGGTTTTTATTGTCTCGATCACCTGACGCAACTGGTCGATGCCC 3759416 Query 146011 TGCCCCCGGTAATCTGTC-TTGGA-GTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGA 146068 || || | ||| || ||| ||| | |||| |||| | ||||| || |||| |||||| | Sbjct 3759417 TGGCCGCTGTAGTC-GTCGTTGCACGTCC-GGTACTCTGCCCCAAAATGCCGCCACTGAA 3759474 Query 146069 ACCCGTAGACGGGCCCCAGGTC--------CCCGGGCTCCCTGTGCCCCAGCCCGGCCCG 146120 | ||||| || || |||| || ||||| ||| | || || ||| | || Sbjct 3759475 AGCCGTATACTGGACCCAAATCGCCAACAGCCCGG--TCCGTATGACCAAGCTTGTCC-- 3759530 Query 146121 GGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGC--GGA-GAG 146177 ||||| |||| || | ||| ||||||| || | ||| | || | | ||| Sbjct 3759531 ----AGGAACTCCCTGGTGCTGTTCCCGTCCCATATGTGAACGTTTTTTGCCTGCAGGAG 3759586 Query 146178 CTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCA 146237 | |||| |||||| || || |||||| || | ||| ||| || | | | Sbjct 3759587 C---TTGGCGTCCGTCTTGCCAGCGACGAACCATAGTAACTCCTCGGCCACAGCGCGGAA 3759643 Query 146238 GAAGACCCTCTTGGTGGTCAGCAGGGG---GAACTGGCCCCGCA---GGGAGTACTTGGC 146291 ||| || | ||| || ||||||||||| | | | ||| |||| | || | | Sbjct 3759644 GAACACACGCTTCGTTGTCAGCAGGGGAAAGGAGTCGCCACGCATATTGAAGCGCAT--- 3759700 Query 146292 CTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCCCCCCTGCGCACCCCGTT 146351 ||| | ||||| || ||||| || ||||| || | |||| ||| || | ||||| Sbjct 3759701 TTGGGCGCCGAACACAGACAGTGTTCCCACCTGTGTGCGGTCCATCCTACGTTCTCCGTT 3759760 Query 146352 CGCCAGGAT 146360 ||||| ||| Sbjct 3759761 CGCCATGAT 3759769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590066798198240