Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq991 385 6e-102
seq185 179 5e-40
seq202 86.0 8e-12
>seq991
Length=691118
Score = 385 bits (426), Expect = 6e-102
Identities = 1221/1866 (65%), Gaps = 38/1866 (2%)
Strand=Plus/Plus
Query 62046 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62104
||||| || |||| | || | || || ||||| || |||||||||||||| ||||| ||
Sbjct 357723 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAG 357781
Query 62105 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62163
|| || || ||| ||||||||| || ||| || ||| ||| | || || || |
Sbjct 357782 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCATAGTTGGGCTCGGCAA 357840
Query 62164 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62223
||| || || | |||||||| ||||||||||| || || | || ||||||||||| |
Sbjct 357841 CATGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 357900
Query 62224 TGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGA 62282
|| | | ||| | || ||||| | || || || | |||| | || |||
Sbjct 357901 TGGTGGACTTGACGGAGATCTCCCACACCGTCTTGTACAGATCGCGCACATGCTGGGGGA 357960
Query 62283 AGGTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCAT 62340
|| | |||||||||| || |||| || ||| ||||| || |||||||
Sbjct 357961 TGGCCTCGATATTCTGAATTGAGCCACGGCTGGAAATTATCTGGTTCTTCATATCATCAT 358020
Query 62341 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400
||| || | ||| || | | | || | || || ||||||| || |||||||| |
Sbjct 358021 CCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAATTCGC 358080
Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460
| || | || | || || || ||||| |||| ||||| || | || || ||||| |
Sbjct 358081 CGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGC 358140
Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520
||| || || ||||| ||||| || ||||| || || |||| | | || || | ||
Sbjct 358141 CCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACAC 358200
Query 62521 CGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580
| | | | |||| || || || | |||| | ||| || | || || ||
Sbjct 358201 CATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAGAGGTTCGTTGGGACCTTGT 358260
Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGCGT-ACGATCCTACATATGTATCATAT 62639
|| || ||||| || || || || || ||| | ||||| |||||
Sbjct 358261 CCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTGCCCT-CGTATGTTTCATAC 358319
Query 62640 GGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCA 62699
|| ||||| || || |||| |||||| || || | ||| || ||||| || ||||||
Sbjct 358320 GGACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCA 358379
Query 62700 AAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATA 62759
||||||| || ||||| ||| ||| ||| || | || | | | |||||
Sbjct 358380 AAGATCTGCTGGTTTAGGAGACCTGCCTCCTCGCTTTCGTAAGGGAATCTCATCAGAATC 358439
Query 62760 AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 62819
|| || || || || || |||| ||||| || || || | ||| ||| ||| || ||
Sbjct 358440 AAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGA--TT 358497
Query 62820 TCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT-GACA 62876
|| | | ||||| | ||||||||||| || || ||||| ||||| ||||| | | ||
Sbjct 358498 TCCGGGCCTCTGGCAGGGGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAGCCA 358557
Query 62877 ATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC-CATCTATTACAA 62931
| ||| ||||| ||||||||||| ||| || | || | || | || |
Sbjct 358558 CTGTCTTAGTGACC---TCCTTCAGTTTCTTAAAGTCGTACGTCTTCTCAGGGGTCACGA 358614
Query 62932 ACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATT 62991
||||||| | || | |||||||| || || ||||| | || | | || ||| |
Sbjct 358615 ACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATACT 358674
Query 62992 GTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCT 63051
| || || |||||||||||||| |||||||| || || | ||| || ||||| ||||
Sbjct 358675 CAACGATTTCTGTGCAAAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCT 358734
Query 63052 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 63111
| |||| || |||||||| | || || | ||| | ||||| || | ||| | || |
Sbjct 358735 TCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAA 358794
Query 63112 TAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTC 63169
| || || ||| | | ||| ||||||| | | |||| | | ||||| | | |
Sbjct 358795 TGATGGCGAACCACAGGGACT-GAGCCTTAACCGTCCGATTGGCTTTTCCTTCGGCCT-C 358852
Query 63170 GTATA-GAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATT 63228
|||| ||| |||||| | || || ||||| |||||||||| | || | ||||| |
Sbjct 358853 GTATTTGAGG-TACAATTGGTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACT 358911
Query 63229 CATCCGGACACATCAACGACCACTCTCCGTCAT---CCTTCACTCGTTTCATAAAGAGAT 63285
| ||| ||||||| |||||| | || |||| ||| || || |||||||||||||
Sbjct 358912 TGTGCGGGCACATCAGCGACCAGT-TC--TCATTTGCCTCAACGCGCTTCATAAAGAGAT 358968
Query 63286 CAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCT 63345
|||| ||||| || || ||||| ||| | | | || || || || || || ||||
Sbjct 358969 CAGGTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCT 359028
Query 63346 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63405
| || || || | ||| | | || ||| |||||||| || |||||||| ||||| |
Sbjct 359029 TCTTCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGG 359088
Query 63406 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63465
| ||||| || ||| || |||||||| | ||| | || || || | |||| ||
Sbjct 359089 CGCCAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCGCA 359148
Query 63466 ACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCAC 63525
||| |||| | || || || | ||||| || || | || || || ||||||
Sbjct 359149 GCATGGGAACGAGGCCATTGGAGGTCCCATTCGTGCCACATATCGAGGTGCCCTTGGCAC 359208
Query 63526 GAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63583
| || | | ||| || || || || || ||| || || || | || || |
Sbjct 359209 GGATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAGTG 359266
Query 63584 TTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643
|| | || | | || ||||| || ||| |||| | || || || |||
Sbjct 359267 TTCCACCGACTTGAAAATACCTTCGATCGAATCGGATGTCATAGTCAGAAGGAAGCAGGA 359326
Query 63644 AGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703
|| | ||| | || |||| | || || | || || || ||||| || || |
Sbjct 359327 CGAGAGTTGCGGTCGGTTAGTGGCAGCGGCGAACAGAGTGGGTGAGGCGTGTGTGAAGAA 359386
Query 63704 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63763
|| || || | |||||| ||||||| ||| | || ||||| ||| |||||
Sbjct 359387 GCGCTCTGACAGCAAATTGTAGGTCTCAACAGCGGCATCGATATCTTCACCATGGATTCC 359446
Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAA 63823
| || || ||||||| ||| || || || | || ||||| ||| || | || |
Sbjct 359447 AATCGCCACGCGCATTAGCATATGTTGCGGCCGCTCGACAATCTTGCCATTACTCTTAAG 359506
Query 63824 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63883
||| || || ||| | || ||||| |||||||| ||||| |||||| || |||||
Sbjct 359507 CAAATACGAACGTTCGAGGGTCTTAAAGCCAAAATAATTGTACCCAAAGTCACGATCGTA 359566
Query 63884 AATAAT 63889
||| ||
Sbjct 359567 AATTAT 359572
>seq185
Length=662383
Score = 179 bits (198), Expect = 5e-40
Identities = 535/823 (65%), Gaps = 3/823 (0%)
Strand=Plus/Plus
Query 33294 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33353
||||| || ||||| || || ||||| || || || || |||| || || | |||
Sbjct 113994 TGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 114053
Query 33354 ATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAAT 33413
||||| | ||||| || | ||||| |||||| || ||||| || | ||
Sbjct 114054 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGG 114113
Query 33414 CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 33473
| ||| || || || || || || ||| | || || ||||| || || || ||
Sbjct 114114 CGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTC 114173
Query 33474 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAAT 33533
|| || || || | || | || || ||||||||| || || | || ||
Sbjct 114174 ACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTCG 114233
Query 33534 CTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCG 33593
| | | || || |||| | || | | ||| | ||||||| || || |||
Sbjct 114234 ATGATGCGCTCGCGACGCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCG 114293
Query 33594 CAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGG 33653
||||||||||||||||| | || | ||||| || || || || || ||||| |||
Sbjct 114294 CAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGG 114353
Query 33654 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACT 33713
|| ||||| || ||||| || || || || || ||| |||||||| || || ||
Sbjct 114354 CCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTCGACG 114413
Query 33714 GCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATCCACTTTTGA 33770
|| ||||| ||||| | | ||||||| | ||| || | | ||||| |
Sbjct 114414 GCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAGGAGATCCAGGACAGG 114473
Query 33771 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33830
||||| || || || || || ||||| || || ||||||||||| || ||||
Sbjct 114474 GCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGTAGTCC 114533
Query 33831 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890
| || ||| | ||||| ||||||| | ||| ||||| |||||||| | |
Sbjct 114534 CGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGGACG 114593
Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 33950
|| || ||||| ||||| || || ||||| || | ||||| || |||||||| || |
Sbjct 114594 TTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCTCCTGA 114653
Query 33951 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAAT 34010
| || || || | | || || || || || ||||| ||| ||||| |||||||
Sbjct 114654 CTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAACGCCAGC 114713
Query 34011 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 34070
||||| || |||| |||||| | || || ||| || | | ||| ||
Sbjct 114714 ACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAAATCCTTG 114773
Query 34071 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
|| | |||||| |||||||| |||||||| || ||||| ||||
Sbjct 114774 GACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGCCT 114816
>seq202
Length=128089
Score = 86.0 bits (94), Expect = 8e-12
Identities = 136/190 (72%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 62046 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62104
||||| || |||| | || | || || ||||| || ||||| |||||||| ||||| ||
Sbjct 56852 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAATACATTCCGGTTTTAAG 56910
Query 62105 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62163
|| || || ||| ||||||||| || ||| || ||| || | || || || |
Sbjct 56911 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCTTAGTTGGGCTCGGCAA 56969
Query 62164 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62223
||| || || | |||||||| |||||||||| || || | || ||||||||||| |
Sbjct 56970 CATGAATGTTGAACGATTGACTCCGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 57029
Query 62224 TGATCGTCTT 62233
|| | | |||
Sbjct 57030 TGGTGGACTT 57039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629806924591680
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