Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq991 385 6e-102 seq185 179 5e-40 seq202 86.0 8e-12 >seq991 Length=691118 Score = 385 bits (426), Expect = 6e-102 Identities = 1221/1866 (65%), Gaps = 38/1866 (2%) Strand=Plus/Plus Query 62046 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62104 ||||| || |||| | || | || || ||||| || |||||||||||||| ||||| || Sbjct 357723 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAG 357781 Query 62105 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62163 || || || ||| ||||||||| || ||| || ||| ||| | || || || | Sbjct 357782 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCATAGTTGGGCTCGGCAA 357840 Query 62164 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62223 ||| || || | |||||||| ||||||||||| || || | || ||||||||||| | Sbjct 357841 CATGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 357900 Query 62224 TGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGA 62282 || | | ||| | || ||||| | || || || | |||| | || ||| Sbjct 357901 TGGTGGACTTGACGGAGATCTCCCACACCGTCTTGTACAGATCGCGCACATGCTGGGGGA 357960 Query 62283 AGGTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCAT 62340 || | |||||||||| || |||| || ||| ||||| || ||||||| Sbjct 357961 TGGCCTCGATATTCTGAATTGAGCCACGGCTGGAAATTATCTGGTTCTTCATATCATCAT 358020 Query 62341 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400 ||| || | ||| || | | | || | || || ||||||| || |||||||| | Sbjct 358021 CCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAATTCGC 358080 Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460 | || | || | || || || ||||| |||| ||||| || | || || ||||| | Sbjct 358081 CGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGC 358140 Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520 ||| || || ||||| ||||| || ||||| || || |||| | | || || | || Sbjct 358141 CCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACAC 358200 Query 62521 CGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580 | | | | |||| || || || | |||| | ||| || | || || || Sbjct 358201 CATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAGAGGTTCGTTGGGACCTTGT 358260 Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGCGT-ACGATCCTACATATGTATCATAT 62639 || || ||||| || || || || || ||| | ||||| ||||| Sbjct 358261 CCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTGCCCT-CGTATGTTTCATAC 358319 Query 62640 GGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCA 62699 || ||||| || || |||| |||||| || || | ||| || ||||| || |||||| Sbjct 358320 GGACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCA 358379 Query 62700 AAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATA 62759 ||||||| || ||||| ||| ||| ||| || | || | | | ||||| Sbjct 358380 AAGATCTGCTGGTTTAGGAGACCTGCCTCCTCGCTTTCGTAAGGGAATCTCATCAGAATC 358439 Query 62760 AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 62819 || || || || || || |||| ||||| || || || | ||| ||| ||| || || Sbjct 358440 AAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGA--TT 358497 Query 62820 TCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT-GACA 62876 || | | ||||| | ||||||||||| || || ||||| ||||| ||||| | | || Sbjct 358498 TCCGGGCCTCTGGCAGGGGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAGCCA 358557 Query 62877 ATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC-CATCTATTACAA 62931 | ||| ||||| ||||||||||| ||| || | || | || | || | Sbjct 358558 CTGTCTTAGTGACC---TCCTTCAGTTTCTTAAAGTCGTACGTCTTCTCAGGGGTCACGA 358614 Query 62932 ACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATT 62991 ||||||| | || | |||||||| || || ||||| | || | | || ||| | Sbjct 358615 ACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATACT 358674 Query 62992 GTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCT 63051 | || || |||||||||||||| |||||||| || || | ||| || ||||| |||| Sbjct 358675 CAACGATTTCTGTGCAAAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCT 358734 Query 63052 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 63111 | |||| || |||||||| | || || | ||| | ||||| || | ||| | || | Sbjct 358735 TCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAA 358794 Query 63112 TAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTC 63169 | || || ||| | | ||| ||||||| | | |||| | | ||||| | | | Sbjct 358795 TGATGGCGAACCACAGGGACT-GAGCCTTAACCGTCCGATTGGCTTTTCCTTCGGCCT-C 358852 Query 63170 GTATA-GAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATT 63228 |||| ||| |||||| | || || ||||| |||||||||| | || | ||||| | Sbjct 358853 GTATTTGAGG-TACAATTGGTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACT 358911 Query 63229 CATCCGGACACATCAACGACCACTCTCCGTCAT---CCTTCACTCGTTTCATAAAGAGAT 63285 | ||| ||||||| |||||| | || |||| ||| || || ||||||||||||| Sbjct 358912 TGTGCGGGCACATCAGCGACCAGT-TC--TCATTTGCCTCAACGCGCTTCATAAAGAGAT 358968 Query 63286 CAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCT 63345 |||| ||||| || || ||||| ||| | | | || || || || || || |||| Sbjct 358969 CAGGTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCT 359028 Query 63346 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63405 | || || || | ||| | | || ||| |||||||| || |||||||| ||||| | Sbjct 359029 TCTTCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGG 359088 Query 63406 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63465 | ||||| || ||| || |||||||| | ||| | || || || | |||| || Sbjct 359089 CGCCAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCGCA 359148 Query 63466 ACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCAC 63525 ||| |||| | || || || | ||||| || || | || || || |||||| Sbjct 359149 GCATGGGAACGAGGCCATTGGAGGTCCCATTCGTGCCACATATCGAGGTGCCCTTGGCAC 359208 Query 63526 GAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63583 | || | | ||| || || || || || ||| || || || | || || | Sbjct 359209 GGATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAGTG 359266 Query 63584 TTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 || | || | | || ||||| || ||| |||| | || || || ||| Sbjct 359267 TTCCACCGACTTGAAAATACCTTCGATCGAATCGGATGTCATAGTCAGAAGGAAGCAGGA 359326 Query 63644 AGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 || | ||| | || |||| | || || | || || || ||||| || || | Sbjct 359327 CGAGAGTTGCGGTCGGTTAGTGGCAGCGGCGAACAGAGTGGGTGAGGCGTGTGTGAAGAA 359386 Query 63704 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63763 || || || | |||||| ||||||| ||| | || ||||| ||| ||||| Sbjct 359387 GCGCTCTGACAGCAAATTGTAGGTCTCAACAGCGGCATCGATATCTTCACCATGGATTCC 359446 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAA 63823 | || || ||||||| ||| || || || | || ||||| ||| || | || | Sbjct 359447 AATCGCCACGCGCATTAGCATATGTTGCGGCCGCTCGACAATCTTGCCATTACTCTTAAG 359506 Query 63824 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63883 ||| || || ||| | || ||||| |||||||| ||||| |||||| || ||||| Sbjct 359507 CAAATACGAACGTTCGAGGGTCTTAAAGCCAAAATAATTGTACCCAAAGTCACGATCGTA 359566 Query 63884 AATAAT 63889 ||| || Sbjct 359567 AATTAT 359572 >seq185 Length=662383 Score = 179 bits (198), Expect = 5e-40 Identities = 535/823 (65%), Gaps = 3/823 (0%) Strand=Plus/Plus Query 33294 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33353 ||||| || ||||| || || ||||| || || || || |||| || || | ||| Sbjct 113994 TGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 114053 Query 33354 ATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAAT 33413 ||||| | ||||| || | ||||| |||||| || ||||| || | || Sbjct 114054 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGG 114113 Query 33414 CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 33473 | ||| || || || || || || ||| | || || ||||| || || || || Sbjct 114114 CGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTC 114173 Query 33474 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAAT 33533 || || || || | || | || || ||||||||| || || | || || Sbjct 114174 ACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTCG 114233 Query 33534 CTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCG 33593 | | | || || |||| | || | | ||| | ||||||| || || ||| Sbjct 114234 ATGATGCGCTCGCGACGCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCG 114293 Query 33594 CAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGG 33653 ||||||||||||||||| | || | ||||| || || || || || ||||| ||| Sbjct 114294 CAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGG 114353 Query 33654 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACT 33713 || ||||| || ||||| || || || || || ||| |||||||| || || || Sbjct 114354 CCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTCGACG 114413 Query 33714 GCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATCCACTTTTGA 33770 || ||||| ||||| | | ||||||| | ||| || | | ||||| | Sbjct 114414 GCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAGGAGATCCAGGACAGG 114473 Query 33771 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33830 ||||| || || || || || ||||| || || ||||||||||| || |||| Sbjct 114474 GCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGTAGTCC 114533 Query 33831 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890 | || ||| | ||||| ||||||| | ||| ||||| |||||||| | | Sbjct 114534 CGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGGACG 114593 Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 33950 || || ||||| ||||| || || ||||| || | ||||| || |||||||| || | Sbjct 114594 TTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCTCCTGA 114653 Query 33951 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAAT 34010 | || || || | | || || || || || ||||| ||| ||||| ||||||| Sbjct 114654 CTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAACGCCAGC 114713 Query 34011 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 34070 ||||| || |||| |||||| | || || ||| || | | ||| || Sbjct 114714 ACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAAATCCTTG 114773 Query 34071 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 || | |||||| |||||||| |||||||| || ||||| |||| Sbjct 114774 GACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGCCT 114816 >seq202 Length=128089 Score = 86.0 bits (94), Expect = 8e-12 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 62046 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62104 ||||| || |||| | || | || || ||||| || ||||| |||||||| ||||| || Sbjct 56852 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAATACATTCCGGTTTTAAG 56910 Query 62105 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62163 || || || ||| ||||||||| || ||| || ||| || | || || || | Sbjct 56911 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCTTAGTTGGGCTCGGCAA 56969 Query 62164 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62223 ||| || || | |||||||| |||||||||| || || | || ||||||||||| | Sbjct 56970 CATGAATGTTGAACGATTGACTCCGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 57029 Query 62224 TGATCGTCTT 62233 || | | ||| Sbjct 57030 TGGTGGACTT 57039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629806924591680