Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq991 387 2e-102
seq185 152 7e-32
seq202 86.0 8e-12
>seq991
Length=691118
Score = 387 bits (428), Expect = 2e-102
Identities = 1224/1874 (65%), Gaps = 36/1874 (2%)
Strand=Plus/Plus
Query 64839 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 64897
||||| || |||| | || | || || ||||| || |||||||||||||| ||||| ||
Sbjct 357723 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAG 357781
Query 64898 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 64956
|| || || ||| ||||||||| || ||| || ||| ||| | || || || |
Sbjct 357782 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCATAGTTGGGCTCGGCAA 357840
Query 64957 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 65016
||| || || | |||||||| ||||||||||| || || | || ||||||||||| |
Sbjct 357841 CATGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 357900
Query 65017 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGA 65075
|| | | ||| | || ||||| | || || || | |||| | || |||
Sbjct 357901 TGGTGGACTTGACGGAGATCTCCCACACCGTCTTGTACAGATCGCGCACATGCTGGGGGA 357960
Query 65076 AGGTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 65133
|| | |||||||||| || |||| | || ||| ||||| || |||||||
Sbjct 357961 TGGCCTCGATATTCTGAATTGAGCCACGGCTGGAAATTATCTGGTTCTTCATATCATCAT 358020
Query 65134 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 65193
||| || | ||| || | | | || | || || | ||||| || || ||||| |
Sbjct 358021 CCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAATTCGC 358080
Query 65194 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 65253
| || | || | || || || ||||| |||| ||||| || | || || ||||| |
Sbjct 358081 CGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGC 358140
Query 65254 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 65313
||| || || ||||| ||||| || ||||| || || |||| | | || || | ||
Sbjct 358141 CCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACAC 358200
Query 65314 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 65373
| | | | |||| || || || |||| | ||| || | || || ||
Sbjct 358201 CATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAGAGGTTCGTTGGGACCTTGT 358260
Query 65374 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGT-ACGATCCTACATATGTATCGTAT 65432
|| ||||| || || || || || ||| | ||||| || ||
Sbjct 358261 CCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTGCCCT-CGTATGTTTCATAC 358319
Query 65433 GGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCG 65492
|| ||||| || || ||||||||||| || || | ||| || ||||| || |||||
Sbjct 358320 GGACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCA 358379
Query 65493 AAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATA 65552
||||||| || ||||| ||| ||| ||| || | || | | | |||||
Sbjct 358380 AAGATCTGCTGGTTTAGGAGACCTGCCTCCTCGCTTTCGTAAGGGAATCTCATCAGAATC 358439
Query 65553 AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 65612
|| || || || || || |||| ||||| || || || | ||| ||| ||| || ||
Sbjct 358440 AAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGA--TT 358497
Query 65613 TCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT-GACA 65669
|| | | ||||| | ||||||||||| || || ||||| ||||| ||||| | | ||
Sbjct 358498 TCCGGGCCTCTGGCAGGGGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAGCCA 358557
Query 65670 ATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAA--TCG-CTCATCTATTACAA 65724
| ||| ||||| ||||||||||| ||| || | || |||| | || |
Sbjct 358558 CTGTCTTAGTGACC---TCCTTCAGTTTCTTAAAGTCGTACGTCTTCTCAGGGGTCACGA 358614
Query 65725 ACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 65784
||||||| | || | |||||||| || |||||||| | || | | || ||| |
Sbjct 358615 ACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATACT 358674
Query 65785 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 65844
| || || |||||||||||||| ||||||||||| || | ||| || ||||| ||||
Sbjct 358675 CAACGATTTCTGTGCAAAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCT 358734
Query 65845 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 65904
| |||| || |||||||| | || || | ||| | ||||| || | ||| | || |
Sbjct 358735 TCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAA 358794
Query 65905 TAATCGCTTTCCAGA-CGACTCGAGCCTTTATTAT-AGATTTGTATCTCTTTTCTCTTTC 65962
| || || ||| | |||| ||||||| | | |||| | | || ||| ||
Sbjct 358795 TGATGGCGAACCACAGGGACT-GAGCCTTAACCGTCCGATTGGCTTTTC-CTTCGGCCTC 358852
Query 65963 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 66022
|||| |||||| | || || ||||| |||||||||| | || || ||||| |
Sbjct 358853 GTATTTGAGGTACAATTGGTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACTT 358912
Query 66023 ATCCGGACACATCAACGACCACTCTCCGTCAT---CCTTCACTCGTTTCATAAAGAGATC 66079
| ||| ||||||| |||||| | || |||| ||| || || ||||||||||||||
Sbjct 358913 GTGCGGGCACATCAGCGACCAGT-TC--TCATTTGCCTCAACGCGCTTCATAAAGAGATC 358969
Query 66080 AGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 66139
||| ||||| || || ||||||||| | | | || || || || || || |||||
Sbjct 358970 AGGTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCTT 359029
Query 66140 TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAAC 66199
|| || || | ||| | | || ||| ||||||| || |||||||| ||||| | |
Sbjct 359030 CTTCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGGC 359089
Query 66200 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 66259
||||| || ||| || |||||||| | ||| | || || || | |||| ||
Sbjct 359090 GCCAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCGCAG 359149
Query 66260 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACG 66319
||| |||| | |||||||| || ||||| || || | || || | || | |||||
Sbjct 359150 CATGGGAACGAGGCCATTGGAGGTCCCATTCGTGCCACATATCGAGGTGCCCTTGGCACG 359209
Query 66320 AAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 66377
|| | | ||| || || || || || ||| || || || | || || ||
Sbjct 359210 GATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAGTGT 359267
Query 66378 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437
| | || | | || || || || ||| |||| | || || || |||
Sbjct 359268 TCCACCGACTTGAAAATACCTTCGATCGAATCGGATGTCATAGTCAGAAGGAAGCAGGAC 359327
Query 66438 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 66497
|| | ||| | || |||| | || || | || || || ||||| || || |
Sbjct 359328 GAGAGTTGCGGTCGGTTAGTGGCAGCGGCGAACAGAGTGGGTGAGGCGTGTGTGAAGAAG 359387
Query 66498 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCT 66557
|| || || | |||||| ||||||| ||| | || ||||| ||| |||||
Sbjct 359388 CGCTCTGACAGCAAATTGTAGGTCTCAACAGCGGCATCGATATCTTCACCATGGATTCCA 359447
Query 66558 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 66617
| || || ||||||| ||| || || || | || || |||||| || | || | |
Sbjct 359448 ATCGCCACGCGCATTAGCATATGTTGCGGCCGCTCGACAATCTTGCCATTACTCTTAAGC 359507
Query 66618 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 66677
|| || || ||| | || ||||| |||||||| ||||| |||||| || ||||||
Sbjct 359508 AAATACGAACGTTCGAGGGTCTTAAAGCCAAAATAATTGTACCCAAAGTCACGATCGTAA 359567
Query 66678 ATAATAACCGAGTT 66691
|| || ||||||
Sbjct 359568 ATTATGGACGAGTT 359581
>seq185
Length=662383
Score = 152 bits (168), Expect = 7e-32
Identities = 529/823 (64%), Gaps = 3/823 (0%)
Strand=Plus/Plus
Query 35870 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 35929
||||| || ||||| || || ||||| || || || || || | || || | |||
Sbjct 113994 TGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 114053
Query 35930 ATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 35989
||||| | ||| || || | || || |||||| || ||||| || | ||
Sbjct 114054 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGG 114113
Query 35990 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 36049
| ||| || ||||| || || || ||| | || || ||||| || || || ||
Sbjct 114114 CGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTC 114173
Query 36050 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 36109
|| || || || | || | || || |||||||| || ||||| || ||
Sbjct 114174 ACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTCG 114233
Query 36110 ATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCG 36169
|| | || || |||| | | || | ||| | ||||||| || || |||
Sbjct 114234 ATGATGCGCTCGCGACGCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCG 114293
Query 36170 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 36229
||||| ||||||||||| | || | |||||||| || || || || ||||| |||
Sbjct 114294 CAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGG 114353
Query 36230 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 36289
|| ||||| || ||||| || || || ||||| || ||||| || || || ||
Sbjct 114354 CCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTCGACG 114413
Query 36290 GCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG-TATCCACTTTTGA 36346
|| ||||| ||||| | | ||||||| | ||| ||| | | ||||| |
Sbjct 114414 GCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAGGAGATCCAGGACAGG 114473
Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406
||||| || || || || || ||||| ||||| || |||||||| || ||||
Sbjct 114474 GCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGTAGTCC 114533
Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466
| || ||| | || || || |||| | ||| ||||| |||||||| | |
Sbjct 114534 CGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGGACG 114593
Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526
|| || ||||| || || || || ||||| || | ||||| || ||||| || || |
Sbjct 114594 TTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCTCCTGA 114653
Query 36527 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 36586
| || || || | | || || || || || || || ||| ||||| |||||||
Sbjct 114654 CTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAACGCCAGC 114713
Query 36587 ACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 36646
||||| || |||| ||||| | || || ||| || | | ||| ||
Sbjct 114714 ACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAAATCCTTG 114773
Query 36647 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689
|| | |||||| |||||||| |||||||| || ||||| ||||
Sbjct 114774 GACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGCCT 114816
>seq202
Length=128089
Score = 86.0 bits (94), Expect = 8e-12
Identities = 136/190 (72%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 64839 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 64897
||||| || |||| | || | || || ||||| || ||||| |||||||| ||||| ||
Sbjct 56852 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAATACATTCCGGTTTTAAG 56910
Query 64898 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 64956
|| || || ||| ||||||||| || ||| || ||| || | || || || |
Sbjct 56911 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCTTAGTTGGGCTCGGCAA 56969
Query 64957 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 65016
||| || || | |||||||| |||||||||| || || | || ||||||||||| |
Sbjct 56970 CATGAATGTTGAACGATTGACTCCGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 57029
Query 65017 TGATCGTCTT 65026
|| | | |||
Sbjct 57030 TGGTGGACTT 57039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658161643971040
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