Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1170 167 2e-36 >seq1170 Length=5152482 Score = 167 bits (184), Expect = 2e-36 Identities = 308/452 (68%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 20889 GGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAA 20948 ||||||| ||||| || | | ||||||| | || || || || ||||| ||| Sbjct 3759048 GGAAACGTGCGCGGCGTGCGCTGCAGCTGCTCCTTTAGCGGGTCCACATGGTTTAGGTAG 3759107 Query 20949 ACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCG 21008 || || | |||||||| ||| || || ||||| || || |||| || || || || || Sbjct 3759108 ACATGCGTGTCACCCATGGTATGAACGAAGTCGCCGGGTTTCAGACCAGTCACATGGGCT 3759167 Query 21009 ATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCG 21068 |||| | || || ||||||||| |||||||| || || || || |||||||| || Sbjct 3759168 ATCATGTGGGTGAGCAGGGCGTAGGAAGCGATGTTGAAAGGTACGCCCAGGCCCATATCA 3759227 Query 21069 GCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ACGTAAAACTGA 21122 ||| ||||||||||||||| |||||||| || || || || ||| | || || Sbjct 3759228 GCGCTCCTCTGGTACAGCTGACAGGACAGTTCGCCACGGTCCTGGGAGACGAAGAATTGC 3759287 Query 21123 CACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCAC 21182 || ||| || || || | ||||| | | |||| ||| ||||| || || Sbjct 3759288 GCCAGGCAGTGGCATGGCGGCAATGCCATTTTTGGTATGTCCAGGGGATTCCATGCAGAC 3759347 Query 21183 ATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGG 21242 || | ||||||| || || | || ||| || | ||| | ||||| |||| Sbjct 3759348 ATGATAATGCGCCTGTCCGACGGATTGGTTTTTATTGTCTCGATCACCTGACGCAACTGG 3759407 Query 21243 TCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTC 21302 || | ||||| || ||||| | ||| | | || |||||| ||||||||||| | | Sbjct 3759408 TCGATGCCCTGGCCGCTGTAGTCGTCGTTGCACGTCCGGTACTCTGCCCCAAAATGCCGC 3759467 Query 21303 CACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 ||||| || ||||| || || |||| |||||| Sbjct 3759468 CACTGAAAGCCGTATACTGGACCCAAATCGCC 3759499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427768930466880