Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq991 416 4e-111 seq185 196 7e-45 >seq991 Length=691118 Score = 416 bits (460), Expect = 4e-111 Identities = 1228/1872 (66%), Gaps = 32/1872 (2%) Strand=Plus/Plus Query 78718 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 78776 ||||| || |||| | || | || || ||||| || |||||||||||||| ||||| || Sbjct 357723 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAG 357781 Query 78777 ACCGAGACT-CCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 78835 || || || ||| ||| ||||| || ||| || ||| ||| | || || || | Sbjct 357782 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCATAGTTGGGCTCGGCAA 357840 Query 78836 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 78895 ||| || || | |||||||| ||||||||||| || || | || ||||||||||| | Sbjct 357841 CATGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 357900 Query 78896 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGA 78954 || | | ||| | || ||||| | || || || | |||| | || ||| Sbjct 357901 TGGTGGACTTGACGGAGATCTCCCACACCGTCTTGTACAGATCGCGCACATGCTGGGGGA 357960 Query 78955 AGGTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCAT 79012 || | |||||||||| || |||| | || ||| ||||| || || |||| Sbjct 357961 TGGCCTCGATATTCTGAATTGAGCCACGGCTGGAAATTATCTGGTTCTTCATATCATCAT 358020 Query 79013 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 79072 ||| || | ||| || | | | || | || || | ||||| || || ||||| | Sbjct 358021 CCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAATTCGC 358080 Query 79073 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTC 79132 | || | || | || || || ||||| |||| || || || | ||||| ||||| | Sbjct 358081 CGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGC 358140 Query 79133 CCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 79192 ||| || || ||||| |||||||||||||| || || |||| | | || || | || Sbjct 358141 CCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACAC 358200 Query 79193 CGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACAT 79252 | | | |||| || || || |||| ||||| || | | ||||| | Sbjct 358201 CATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAGAGGTTCGTTGGGACCTTGT 358260 Query 79253 TCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAG 79312 ||| | ||| || || ||||| || || || || || |||||||||||| | Sbjct 358261 CCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTGCCCTCGTATGTTTCATACG 358320 Query 79313 GTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGA 79372 | ||||| | ||| | ||||||||| || || | ||| || ||||| || ||||| | Sbjct 358321 GACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCAA 358380 Query 79373 AAATCTTCTTATT---GAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAA 79429 | |||| || || |||| || || || ||| || | || | | | |||| Sbjct 358381 AGATCTGCTGGTTTAGGAGACCT---GCCTCCTCGCTTTCGTAAGGGAATCTCATCAGAA 358437 Query 79430 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAA 79489 | || || || || || || |||| ||||| || || || | ||| ||| ||| || Sbjct 358438 TCAAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGA-- 358495 Query 79490 TTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCT-GA 79546 |||| | | ||||| | ||||||||||| || || ||||| ||||| |||||| | | Sbjct 358496 TTTCCGGGCCTCTGGCAGGGGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAGC 358555 Query 79547 CTATTACTT--TGACCACATCCTTTAGTTTGAGAAAATC--AAATCGTC-CATCTATTAC 79601 | | ||| ||||| ||||| ||||| ||| || | || || || | || Sbjct 358556 CACTGTCTTAGTGACC---TCCTTCAGTTTCTTAAAGTCGTACGTCTTCTCAGGGGTCAC 358612 Query 79602 AAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 79661 |||||||| | |||| |||||||| || |||||||| | || | | || ||| Sbjct 358613 GAACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATA 358672 Query 79662 TTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACT 79721 | | ||||| ||||| || ||||| ||||| ||||| || | ||| || ||||| || Sbjct 358673 CTCAACGATTTCTGTGCAAAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCT 358732 Query 79722 CTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTC 79781 ||| |||| || |||||||| | || || | ||| | ||||| || | ||| | || Sbjct 358733 CTTCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTC 358792 Query 79782 TATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTT 79840 || || || ||| | |||| ||||||| | | ||| | | ||| | Sbjct 358793 AATGATGGCGAACCACAGGGACT-GAGCCTTAACCGTCCGATTGGCTTTTCCTTCGGCCT 358851 Query 79841 CGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATT 79900 |||||| || ||| | || || ||||| ||||||||||| | | || ||||| | Sbjct 358852 CGTATTTGAGGTACAATTGGTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACT 358911 Query 79901 CGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAG 79960 || || ||||||| |||||| | ||| ||| || || |||||||||||||||| Sbjct 358912 TGTGCGGGCACATCAGCGACCAGTTCTCATTTGCCTCAACGCGCTTCATAAAGAGATCAG 358971 Query 79961 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT 80020 | ||||| || || ||||| ||| | | | || ||| || || || || ||||| | Sbjct 358972 GTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCTTCT 359031 Query 80021 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 80080 | || || | ||| | | || ||| |||||||| || |||||||| ||||| | | | Sbjct 359032 TCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGGCGC 359091 Query 80081 CCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 80140 | || || ||| || |||||||| | ||| | || || || | |||| || || Sbjct 359092 CAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCGCAGCA 359151 Query 80141 TTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 80200 | |||| | |||||||| || ||||| || || | || || | || ||||||| | Sbjct 359152 TGGGAACGAGGCCATTGGAGGTCCCATTCGTGCCACATATCGAGGTGCCCTTGGCACGGA 359211 Query 80201 T--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 80258 | | | ||| || || || || || ||| || || || | || || ||| Sbjct 359212 TGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAGTGTTC 359269 Query 80259 TAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGA 80318 | || | | || || || || ||| |||| | || || || ||| || Sbjct 359270 CACCGACTTGAAAATACCTTCGATCGAATCGGATGTCATAGTCAGAAGGAAGCAGGACGA 359329 Query 80319 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 80378 | ||| | || |||| | || || | || || || ||||| || || | Sbjct 359330 GAGTTGCGGTCGGTTAGTGGCAGCGGCGAACAGAGTGGGTGAGGCGTGTGTGAAGAAGCG 359389 Query 80379 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTAC 80438 || ||||| | |||||| ||||||| ||| | || ||||| ||| ||||| | Sbjct 359390 CTCTGACAGCAAATTGTAGGTCTCAACAGCGGCATCGATATCTTCACCATGGATTCCAAT 359449 Query 80439 CGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 80498 ||| || ||||||| ||| || || || | || || |||||| ||| | || | ||| Sbjct 359450 CGCCACGCGCATTAGCATATGTTGCGGCCGCTCGACAATCTTGCCATTACTCTTAAGCAA 359509 Query 80499 GTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 80558 || || ||| | || ||||| |||||||| ||||| |||||| || |||||||| Sbjct 359510 ATACGAACGTTCGAGGGTCTTAAAGCCAAAATAATTGTACCCAAAGTCACGATCGTAAAT 359569 Query 80559 AATAACCGAGTT 80570 || |||||| Sbjct 359570 TATGGACGAGTT 359581 >seq185 Length=662383 Score = 196 bits (216), Expect = 7e-45 Identities = 541/825 (66%), Gaps = 7/825 (1%) Strand=Plus/Plus Query 49672 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 49731 ||||| || ||||| || || ||||| || || || || |||| || || | ||| Sbjct 113994 TGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 114053 Query 49732 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 49791 ||||| | ||||| || | || || |||||| || ||||| || | || Sbjct 114054 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGG 114113 Query 49792 CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 49851 | ||| || ||||| || || || ||| | || || ||||| || || || || Sbjct 114114 CGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTC 114173 Query 49852 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 49911 || || || || | || | || || ||||||||| || || || || || Sbjct 114174 ACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTCG 114233 Query 49912 CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 49971 | | | || || |||| | |||| | ||| | ||||||| || || ||| Sbjct 114234 ATGATGCGCTCGCGACGCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCG 114293 Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031 ||||||||||||||||| | || || |||||||| || || || || ||||| ||| Sbjct 114294 CAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGG 114353 Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAAAAGAAGATTCCTTCTA 50089 || ||||| || ||||| || || || ||||| || | | | |||||||| || || | Sbjct 114354 CCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTG--AAGAAGATGCCCTCGA 114411 Query 50090 CTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC--GCTGTCATG-TATCCACTTTT 50146 | |||||||| |||| | | ||||||| | |||| || | | ||||| Sbjct 114412 CGGCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAGGAGATCCAGGACA 114471 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 | ||||| || || || || || ||||| || || ||||||||||| || |||| Sbjct 114472 GGGCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGTAGT 114531 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266 | || ||| | ||||| ||||||| | ||| ||||| |||||||| | Sbjct 114532 CCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGGA 114591 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 ||| || ||||| ||||| || || ||||| || | ||||| || |||||||| || Sbjct 114592 CGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCTCCT 114651 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 || || || || | | || || || || || || || ||| ||||| ||||||| Sbjct 114652 GACTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAACGCCA 114711 Query 50387 ATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTT 50446 ||||| || ||||| ||||| | || || ||| || | | ||| | Sbjct 114712 GCACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAAATCCT 114771 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | || | ||| || |||||||| |||||||| || ||||| |||| Sbjct 114772 TGGACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGCCT 114816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718256625343840