Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq991 363 2e-95 seq185 158 2e-33 seq202 87.8 2e-12 >seq991 Length=691118 Score = 363 bits (402), Expect = 2e-95 Identities = 1192/1840 (65%), Gaps = 31/1840 (2%) Strand=Plus/Plus Query 70823 CGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACT-CCATCCGTAAAAA 70881 |||||| ||| || ||||||||||| || ||||| || || || || ||| ||||||| Sbjct 357746 CGGCTT-CGTGCGGAGATAGTACATTCCGGTTTTAAGGCC-AGCCTTCCACGAGTAAAAA 357803 Query 70882 TGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTT 70941 || || ||| || ||| |||| | || ||||| | ||||| || | ||| ||||| Sbjct 357804 TGTATGGACGTCAGCTTGCCATAGTTGGGCTCGGCAACATGAATGTTGAACGATTGACTC 357863 Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 ||||||||||| || || | || ||||||||||| ||| | | ||| | || ||| Sbjct 357864 TGATCGATGAATGCACCACGATCCGCAGCCATTTTAATGGTGGACTTGACGGAGATCTCC 357923 Query 71002 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTG--TATTCTGAATGGAT 71058 || | || || || | |||| | || ||| || | |||||||||| || Sbjct 357924 CACACCGTCTTGTACAGATCGCGCACATGCTGGGGGATGGCCTCGATATTCTGAATTGAG 357983 Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 71118 |||| | ||| ||| || || || || |||| ||| || | ||| || | | Sbjct 357984 CCACGGCTGGAAATTATCTGGTTCTTCATATCATCATCCCACAAGTCAAGCTCCGTCAGA 358043 Query 71119 ACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 71178 | || | || || | ||||| || || ||||| || || | || | || || || Sbjct 358044 TCCCTCAACAGGTGGTGGTTAACCACCTGGAATTCGCCGGAGAGAACGCGTCGTGTATAG 358103 Query 71179 ATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 71238 ||||| |||| ||||| || | || || ||||| |||| || || ||||| ||||| Sbjct 358104 ATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGCCCATTATCTGGGCAGTGGATGCC 358163 Query 71239 GTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTT 71298 || ||||| || || |||| ||| || || | ||||||| ||| || || Sbjct 358164 GTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACACCATGTTTCTTGATCGACTCCTTC 358223 Query 71299 AGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATG 71358 || |||| | ||| || | || ||| || || Sbjct 358224 AGCTTGGCCCAGTCCCAGAGGTTCGTTGGGACCTTGTCCCACATATCGTACTGAAGAATT 358283 Query 71359 CCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCA 71418 || || || || || | ||||| || || || ||||| | ||| |||||| Sbjct 358284 CCCTTGCTTACGGGACTGCCCTCGTATGTTTCATACGGACCTTCGGCCTGGGCCAGTTCA 358343 Query 71419 CAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATT---GAGATCT 71475 ||||| || || | ||| |||||||| || ||||| || |||| || || |||| || Sbjct 358344 CAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCAAAGATCTGCTGGTTTAGGAGACCT 358403 Query 71476 TGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 71535 || ||| ||| || | || | | | ||||| || || || || || || ||| Sbjct 358404 ---GCCTCCTCGCTTTCGTAAGGGAATCTCATCAGAATCAAGGCATCAGCAAAACCCTGA 358460 Query 71536 ACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAG--CTTCTGGAATAGGAT 71593 | |||||| || || || | || ||| ||| || |||| | | ||||| | |||| Sbjct 358461 ATGCCAATGCCAATGGGGCGATGCCTCAAATTTGA--TTTCCGGGCCTCTGGCAGGGGAT 358518 Query 71594 AATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTA-CTT--TGACCACATCCT 71650 ||||||| || || ||||| ||||| ||||| | | | | ||| ||||| |||| Sbjct 358519 AATAATTGATGTCAATAATCTTATTCAGATTCTTAGCCACTGTCTTAGTGACC---TCCT 358575 Query 71651 TTAGTTTGAGAAAATCAAA--TCTCC-CATCTATTACAAACACGTTCAAGGCAACAGATG 71707 | ||||| ||| || | ||| | || | || |||| ||| | || | |||| Sbjct 358576 TCAGTTTCTTAAAGTCGTACGTCTTCTCAGGGGTCACGAACATGTTGAGAGCGATGGATG 358635 Query 71708 CCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGAT 71767 |||| || |||||||| | || | | | ||| | | ||||| |||||||||| Sbjct 358636 CCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATACTCAACGATTTCTGTGCAAAGAT 358695 Query 71768 TACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 71827 |||| ||||||||||| || | ||| || ||||| ||||| |||| || |||||||| Sbjct 358696 TACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCATGCATCCTTGA 358755 Query 71828 AAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACT 71886 | || ||| | ||| | ||||| || | ||| | || || || || ||| | |||| Sbjct 358756 ACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAATGATGGCGAACCACAGGGACT 358815 Query 71887 CGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCG 71946 ||||||| | | ||| | | ||| ||||||| || ||| | || Sbjct 358816 -GAGCCTTAACCGTCCGATTGGCTTTTCCTTCGGCCTCGTATTTGAGGTACAATTGGTCA 358874 Query 71947 AACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCAC 72006 || ||||| |||||| ||| | | || ||||| | | ||| ||||||| ||||| Sbjct 358875 AATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACTTGTGCGGGCACATCAGCGACCAG 358934 Query 72007 TCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 72066 | ||| | | || || ||||||||||||||||| ||||| || || ||||| | Sbjct 358935 TTCTCATTTGCCTCAACGCGCTTCATAAAGAGATCAGGTATCCAGAGGGCATAAAATAAA 358994 Query 72067 TCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 72126 || | | | || ||| || || || || ||||| || || || | ||| | | || | Sbjct 358995 TCGCGAGCACGATTCTCTTCCTTACCGGTGTTCTTCTTCAGTTCCAAGAATTCAAAAACA 359054 Query 72127 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGA 72186 || |||||||| || |||||||| ||||| | | || || || ||| || |||||| Sbjct 359055 TCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGGCGCCAGGGCGCTTGCCGCCACCCTGA 359114 Query 72187 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCA 72246 || | ||| | || || || | |||| || ||| |||| | |||||||| | Sbjct 359115 TCCACGTAACGCGCTACATTGTTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTC 359174 Query 72247 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTA 72304 ||||| || || | || || | || ||||||| || | || ||| || || | Sbjct 359175 CCATTCGTGCCACATATCGAGGTGCCCTTGGCACGGATGCAATGGACATT--CAGGCCAA 359232 Query 72305 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 72364 | || || ||| || || || | || || ||| | || | | || || || | Sbjct 359233 TGCCGCCCGCCGACTTGGAAATCATGGCACAGTGTTCCACCGACTTGAAAATACCTTCGA 359292 Query 72365 TACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 72424 | ||| |||| | || || || ||| || | ||| | || |||| | | Sbjct 359293 TCGAATCGGATGTCATAGTCAGAAGGAAGCAGGACGAGAGTTGCGGTCGGTTAGTGGCAG 359352 Query 72425 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 72484 | || | || || || ||||| || || | || ||||| | |||||| |||| Sbjct 359353 CGGCGAACAGAGTGGGTGAGGCGTGTGTGAAGAAGCGCTCTGACAGCAAATTGTAGGTCT 359412 Query 72485 CAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCT 72544 ||| ||| | || ||||| ||| ||||| | ||| || ||||||| |||||| | Sbjct 359413 CAACAGCGGCATCGATATCTTCACCATGGATTCCAATCGCCACGCGCATTAGCATATGTT 359472 Query 72545 GAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 72604 | || | || || |||||| ||| | || | ||| || || ||| | || |||| Sbjct 359473 GCGGCCGCTCGACAATCTTGCCATTACTCTTAAGCAAATACGAACGTTCGAGGGTCTTAA 359532 Query 72605 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 | |||||||| ||||| |||||| || |||||||| || Sbjct 359533 AGCCAAAATAATTGTACCCAAAGTCACGATCGTAAATTAT 359572 >seq185 Length=662383 Score = 158 bits (174), Expect = 2e-33 Identities = 534/827 (65%), Gaps = 11/827 (1%) Strand=Plus/Plus Query 41777 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCC 41836 ||||| || ||||| || || ||||| || ||||| || |||| || || | ||| Sbjct 113994 TGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 114053 Query 41837 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 41896 ||||| | ||||| || | || || |||||| || ||||| || | || Sbjct 114054 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGG 114113 Query 41897 CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 41956 | ||| || | || || || || ||| | || || ||||| || || || || Sbjct 114114 CGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTC 114173 Query 41957 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 42016 || || || || | || | || || |||||||| || ||||| || ||| Sbjct 114174 ACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAAT----GAT 114229 Query 42017 CTTACTGTTTCT-TC---ACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 42072 || || | | || || |||| | | || | ||| | ||||||| || || Sbjct 114230 CTCGATGATGCGCTCGCGACGCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAA 114289 Query 42073 ATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 42132 ||||||||||||||||| || | || | |||||||| || || || || ||||| Sbjct 114290 GTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCAT 114349 Query 42133 TAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTC 42192 ||||| ||||| || ||||| || ||||| ||||| || |||||||| || || Sbjct 114350 CAGGCCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTC 114409 Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG-TATCCACTT 42249 || || ||||| ||||| | | ||||||| | ||| ||| | | ||||| Sbjct 114410 GACGGCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAGGAGATCCAGGA 114469 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 | ||||| || || || || || ||||| || || ||||||||||| || || Sbjct 114470 CAGGGCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGTA 114529 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 || | || ||| | || || ||||||| | ||| ||||| || ||||| Sbjct 114530 GTCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATG 114589 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 | ||| || ||||| ||||| || || ||||| || | |||||| || | ||| || || Sbjct 114590 GACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCTC 114649 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 || || || || | | || ||||| || || || || ||| ||||| ||||| Sbjct 114650 CTGACTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAACGC 114709 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 || ||||| || |||| |||||| | | || ||| || | | ||| Sbjct 114710 CAGCACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAAATC 114769 Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 || || | ||| || ||||| || |||||||| || || || |||| Sbjct 114770 CTTGGACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGCCT 114816 >seq202 Length=128089 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/167 (73%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 70823 CGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACT-CCATCCGTAAAAA 70881 |||||| ||| || ||||| ||||| || ||||| || || || || ||| ||||||| Sbjct 56875 CGGCTT-CGTGCGGAGATAATACATTCCGGTTTTAAGGCC-AGCCTTCCACGAGTAAAAA 56932 Query 70882 TGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTT 70941 || || ||| || ||| ||| | || ||||| | ||||| || | ||| ||||| Sbjct 56933 TGTATGGACGTCAGCTTGCCTTAGTTGGGCTCGGCAACATGAATGTTGAACGATTGACTC 56992 Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 70988 |||||||||| || || | || ||||||||||| ||| | | ||| Sbjct 56993 CGATCGATGAATGCACCACGATCCGCAGCCATTTTAATGGTGGACTT 57039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671127824190560