Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq991 105 7e-18 seq264 96.9 4e-15 >seq991 Length=691118 Score = 105 bits (116), Expect = 7e-18 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || |||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 450655 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 450596 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | ||| | ||||||| ||||| || |||| ||| | Sbjct 450595 TCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATG 450536 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTT 143194 |||||||| || | || || ||||| || ||||| ||| |||| Sbjct 450535 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT--CTTGTGTT 450493 Score = 104 bits (114), Expect = 2e-17 Identities = 540/856 (63%), Gaps = 22/856 (3%) Strand=Plus/Plus Query 156767 GCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTC 156826 |||||||| |||| || || || || ||| ||| | ||||||| || || | || Sbjct 358335 GCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCAAAGATCTGCTGGTTT 358394 Query 156827 AATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAA 156886 | ||| | || | ||||| |||| || | | || || || || ||||| || ||| Sbjct 358395 AGGAGACCTGCCTCCTCGCTTTCGTAAGGGAATCTCATCAGAATCAAGGCATCAGCAAAA 358454 Query 156887 CCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATA 156946 || |||||||||||||| ||||| ||||| | || ||| ||||| || | | Sbjct 358455 CCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGATTTCCGGGCCTCTGGCAGG 358514 Query 156947 GGGTAGAAATTGCGATCAATAATTTTATTCAAA---CTATCCACTACATGTTTGACCACA 157003 || || ||||| |||||||| ||||||| | || ||||| | ||||| | Sbjct 358515 GGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAGCCACTGTCTTAGTGACCTC- 358573 Query 157004 GTGTGCAATAGTTGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATC 157060 | || | | ||| || | | | ||| | | | | |||| || || Sbjct 358574 --CTTCAGTTTCTTAAAGTCGTACGTCTTCTCAGGGGTCACGAACATGTTGAGAGCGATG 358631 Query 157061 GACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACAC 157120 || || || || || ||||| |||||||||||| |||| | || ||||| | || Sbjct 358632 GATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATACTCAACGATTTCTGTGCAA 358691 Query 157121 AAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCC 157180 | ||| ||||| || || || ||| |||||||| || | |||||| || ||| Sbjct 358692 AGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCATGCATCC 358751 Query 157181 TTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATGTTGCGCATTAAT 157240 ||| | | ||| || || |||| || || | || || |||||| ||| | | Sbjct 358752 TTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAATGATG--GCGAACCACA 358809 Query 157241 GTAACCGCGGGCATTTGCTCGCGAAACTGG-----CCTTTATCCTCGTAATGTTTGTACC 157295 | || | || || | || | ||| |||| ||||||| | |||| Sbjct 358810 GGGAC--TGAGCCTTAAC-CGTCCGATTGGCTTTTCCTTCGGCCTCGTATTTGAGGTACA 358866 Query 157296 AGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTA 157355 | | ||||| || || || | ||| | || ||||||| || || ||||| | Sbjct 358867 ATTGGTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACTTGTGCGGGCACATCA 358926 Query 157356 ATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGT 157415 ||||| | | ||| | |||||||| |||||||| | ||| || | ||| | || | Sbjct 358927 GCGACCAGTTCTCATTTGCCTCAACGCGCTTCATAAAGAGATCAGGTATCCAGAGGGCAT 358986 Query 157416 TCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGT 157475 | ||||| || || | ||||| | || |||| || | || | | Sbjct 358987 AAAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCTTCTTCAGTTCCAAGAATT 359046 Query 157476 CCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GC 157532 | | || ||| ||||||| || || | ||| | || ||| || ||||| || Sbjct 359047 CAAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGGCGCCAGGGCGCTTGCCGC 359106 Query 157533 CACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGC 157592 |||| |||||||||| |||| | | ||| || || ||||||||||| || | || || Sbjct 359107 CACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCGCAGCATGGGAACGAGGCCAT 359166 Query 157593 TGGCGGTGCCGTTCGT 157608 ||| ||| || ||||| Sbjct 359167 TGGAGGTCCCATTCGT 359182 >seq264 Length=2409178 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| ||| ||||| | || || || || || |||||||||||| Sbjct 1047313 GCCGCCGCGCAGACGCAGAACCAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 1047254 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||| || || || || || || |||||||||| ||||| || || || Sbjct 1047253 CAGGGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 1047194 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||||| ||| || || Sbjct 1047193 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGGCTCGAC 1047134 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||||||||| || || || || || ||||| Sbjct 1047133 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1047086 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || || | || || || || || |||||||||||| Sbjct 1045261 GCCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 1045202 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||| || || || || || || |||||||||| ||||| || || || Sbjct 1045201 CAGGGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 1045142 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | || || | ||| || || Sbjct 1045141 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCGAC 1045082 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||||||||| || |||||||| |||||||| Sbjct 1045081 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTGCAT 1045034 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || || | || || || || || |||||||||||| Sbjct 1045945 GCCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 1045886 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||| || || || || || || |||||||||| ||||| || || || Sbjct 1045885 CAGGGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 1045826 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||||| ||| || || Sbjct 1045825 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGGCTCGAC 1045766 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||||||||| || || || || || ||||| Sbjct 1045765 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1045718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507005806105920