Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq185 297 3e-75
seq815 188 1e-42
seq991 138 2e-27
seq202 93.3 6e-14
>seq185
Length=662383
Score = 297 bits (328), Expect = 3e-75
Identities = 576/845 (68%), Gaps = 24/845 (3%)
Strand=Plus/Minus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
|||| |||||||||||||||| || |||||||| |||||||||||||| | ||| |
Sbjct 114816 AGGCCGAGGCCTCCTTTTGGACCGTGGAAGAGGTGGATCTGTCCAAGGATTTAACCGACT 114757
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157
|| | ||| | | || || || | || || || || | |||| |||||||
Sbjct 114756 GGCA---TCGCCTTAAGGATGACGAACGTCATTTCATCTCCCATGTGCTGGCGTTCTTTG 114700
Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217
||| ||||||||| ||||||||||| || ||| | || ||| ||| ||| || |
Sbjct 114699 CCGCCTCCGATGGCATCGTCAACGAGAACCTGGTCGAGCGTTTCAGTCAGGAGGTGCAGA 114640
Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277
| |||||| ||||| || || ||||| ||| || |||||||| || ||||| |
Sbjct 114639 TCACAGAGGCCCGCTGCTTCTATGGCTTCCAGATCGCCATGGAGAACGTCCATTCGGAGA 114580
Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTA 125337
||||| | ||||| |||| ||||| || |||||||| | || || ||||
Sbjct 114579 TGTACAGTGTGCTGATCGACACTTACATCCGGGATCCGCATCAGCGGGACTACCTGTTTA 114520
Query 125338 ACGCAATCGACACGGTGCCGTCTAT-ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATC 125396
| || ||||| || ||||| | | | | |||| || | |||| | ||||||
Sbjct 114519 ATGCCATCGAGACCATGCCGGCGGTGAAGCGCAAAG-CTGACTGGGCCCTGTCCTGGATC 114461
Query 125397 GATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGC 125453
| ||||||| | || | || | | | ||||| |||||||| ||||||
Sbjct 114460 TC---CTCCAAGTCTGCCAACTTTGGAGAGCGGATCATTGCATTTGCCGCCGTCGAGGGC 114404
Query 125454 ATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCC 125513
|||||||| || || ||||| | || || ||||| ||||||||||| || |||||
Sbjct 114403 ATCTTCTTCAGCGGCAGCTTTGCCTCTATTTTCTGGCTGAAGAAGCGCGGCCTGATGCCT 114344
Query 125514 GGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573
|| ||||| | |||||| | || || || |||||||| || ||||| ||||||||
Sbjct 114343 GGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCG 114284
Query 125574 ATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGG--TCA 125631
| || |||| | | ||||| |||||| | ||| | | | |||
Sbjct 114283 GTGCTGATGTTCC---AGCATCTG--------GTGCAGCGACCGCGTCGCGAGCGCATCA 114235
Query 125632 TCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGG 125691
|| | || | || || ||| || ||||| ||||| | ||||| |||| || |
Sbjct 114234 TCGAGATCATTCGTGACGCTGTGGACATTGAACAGGAGTTCTTGACCGATGCCCTGCCCG 114175
Query 125692 TCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATC 125751
| | |||| |||||||||||| | ||||||| ||||||| ||||||||||| ||||
Sbjct 114174 TGAATCTGATCGGCATGAACTGCGACCTAATGTCGCAGTACATTGAGTTTGTGGCTGATC 114115
Query 125752 GTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCA 125811
| || || ||||||| | | || || |||||| ||||||| || || | ||||
Sbjct 114114 GCCTGCTCGTCGAGTTGGGCGTTGGAAAAATCTACAACACCAAGAACCCGTTCAACTTCA 114055
Query 125812 TGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACA 125871
|| | || || || || || |||||||||||||| ||||||||||| ||||||||
Sbjct 114054 TGGAGATGATCTCGCTGGACGGCAAGACCAACTTTTTTGAGAAGAAGGTGGGCGAGTACC 113995
Query 125872 AACGC 125876
| |||
Sbjct 113994 AGCGC 113990
>seq815
Length=1480391
Score = 188 bits (208), Expect = 1e-42
Identities = 385/570 (68%), Gaps = 14/570 (2%)
Strand=Plus/Minus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
|||||| | ||||| || |||| ||| ||||| | || ||||||||||| || ||||||
Sbjct 325540 TTGCGGAAGAAGATCACACCGGATCGGGGACCGCGCAGCGTCTTGTGCGTGGTGGTGGTC 325481
Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221
|||||||| ||| || || || ||||| | | | || | | ||| || |
Sbjct 325480 ACAATGTCGGCATATTCGAACGGCGATGGAATCAAACCGGCGGCCACAATGCCAGCCACA 325421
Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281
|| || ||||||||||| || ||| || | | || ||||| ||||| || |
Sbjct 325420 TGGGCCATATCGGCCATTAGATAGGCACCAACATCGTCACAAATCTGACGGAAACGGGCA 325361
Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341
||||||| | || | |||||| | ||||||| || || | | || |||
Sbjct 325360 TAGTCCAGCAGTCGGGAATAGCACGAGATGCCGGCAATAATAATCTGCGGACGGAAATTC 325301
Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401
|| || |||||| || ||| | || || | || ||| |||| |||| |||||||||
Sbjct 325300 TTTGCTGCCTCGGCCAGCTTGTCGTAATCAATGATTCCCGTCTCCGGATTGACCTTGTAC 325241
Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449
|||||||| ||||| |||| ||||| ||||| | || ||| ||| ||
Sbjct 325240 GGCATGCTCTCGAAGAAGATCGATGTGGCGGAGATCTTCTTGGTGGGCGTAAAGAAGCCA 325181
Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509
|| || || || || || ||||| ||||| || |||||||| | | || || |
Sbjct 325180 TGGGTAAGATGTCCACCATCGGGTAGATCCAGACCCATGATGCGGTCATGTGGCCGGCAG 325121
Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569
| || || || || || || |||||| || || || || || || ||| || |||
Sbjct 325120 ACGCCCGTATAGACAGCCAAATTGGCCGGGGAACCGGAATAAGGCTGGACATTGACGCCC 325061
Query 127570 CATTCGGACTCGTTCAAATTGAAC-GCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628
|| | | |||| | | |||||| |||| | || || | ||| || | |||||||||
Sbjct 325060 CACTTGTCCTCGCTGAGGTTGAACAGCTCACGGCCA-CGATTCTGGGCCAACAGTTCGAT 325002
Query 127629 GCGATCGATAAACTCGTTACCACCATAGTA 127658
|| |||||| |||||||| |||||||||||
Sbjct 325001 GCAATCGATGAACTCGTTGCCACCATAGTA 324972
>seq991
Length=691118
Score = 138 bits (152), Expect = 2e-27
Identities = 372/560 (66%), Gaps = 18/560 (3%)
Strand=Plus/Minus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864
|| || || | | ||| |||||| || || ||||| || | | ||| |||||| | |
Sbjct 359182 ACGAATGGGACCTCCAATGGCCTCGTTCCCATGCTGCGAGTCTTCAA--CAATGTAGCGC 359125
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
| ||||| ||||| ||| || || || ||||| | ||| |||||||||| || |
Sbjct 359124 GTTACGTGGATCAGGGTGGCGGCAAGCGCCCTGGCGCCTTTGCCATCTACTTGGAGCCCT 359065
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
|||| | || |||||||| || | || || || ||| | || |||||| |
Sbjct 359064 GGCATTCCGATGTTTTTGAATTCTTGGAACTGAAGAAGAACACCGGTAAGGAAGAGAATC 359005
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044
| || | || || |||||||| |||||| | || ||| | || ||||||||||| | |
Sbjct 359004 GTGCTCGCGATTTATTTTATGCCCTCTGGATACCTGATCTCTTTATGAAGCGCGTTGAGG 358945
Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104
|| ||||| || |||||||| || || ||||| ||| ||| ||||
Sbjct 358944 CAAATGAGAACTGGTCGCTGATGTGCCCGCACAAGTGTCCCGGCCTGCAGGATGTTTGGG 358885
Query 97105 GCGAAGAGTTTGAGGCCAA--GTACACGGCCTACGAG---CAAG--AGGGCCGATACGTG 97157
|||| || ||||| |||| |||| |||||| ||| | ||| || ||
Sbjct 358884 GCGACGAATTTGA--CCAATTGTACCTCAAATACGAGGCCGAAGGAAAAGCCAAT-CG-- 358830
Query 97158 AGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217
|||| || | || | |||||| |||||| | ||| ||||| ||||||||
Sbjct 358829 -GACG-GTTAAGGCTCAGTCCCTGTGGTTCGCCATCATTGAGGCGCAGGTGGAGACTGGC 358772
Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277
| ||| || || || | ||||||| | || | || ||||| || | | | |||
Sbjct 358771 AATCCTTATATGCTGTTCAAGGATGCATGCAACAGGAAGAGCAATCAGCAGAATGTTGGC 358712
Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337
||||||||| || ||||| ||||| ||||| || ||||| | || || ||||| |
Sbjct 358711 ACCATCAAGTGCAGTAATCTTTGCACAGAAATCGTTGAGTATTCGTCGCCCGACGAAATC 358652
Query 97338 GCAGTTTGCGTTCTGGCATC 97357
|| |||||| ||||||||
Sbjct 358651 GCCGTTTGCAACCTGGCATC 358632
Score = 132 bits (146), Expect = 7e-26
Identities = 317/475 (67%), Gaps = 6/475 (1%)
Strand=Plus/Minus
Query 97776 GGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTT 97835
||| | || |||||| ||||||| || || ||||| ||||| ||||| |||| | |
Sbjct 358201 GGTGTCAGGAACTCTCTGCTGGTCGCCCCCATGCCAACGGCATCCACTGCCCAGATAATG 358142
Query 97836 GGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCT 97895
|||||| ||||| || || |||| ||| |||| || || ||||| | ||
Sbjct 358141 GGCAATAACGAATCCTTCGAGCCGTACACCACAAATATCTATACACGACGCGTTCTCTCC 358082
Query 97896 GGAGAGTTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACGG--CTCAATCTGT 97953
|| || || || || ||| ||| || | | || || |||| || | |||
Sbjct 358081 GGCGAATTCCAGGTGGTTAACCACCACCTGTTGAGGGATCTG--ACGGAGCTTGACTTGT 358024
Query 97954 GGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCA 98013
|| | ||||| ||| | ||| || | || | ||| || ||||| || ||
Sbjct 358023 GGGATGATGATATGAAGAACCAGATAATTTCCAGCCGTGGCTCAATTCAGAATATCGAGG 357964
Query 98014 TCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGAT-TCCGACCAAGACG 98072
|||||| | | ||||| | |||||||| || |||||||| |||| | ||| |
Sbjct 357963 CCATCCCCCAGCATGTGCGCGATCTGTACAAGACGGTGTGGGAGATCTCCGTC-AAGTCC 357905
Query 98073 CTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTG 98132
|| | |||||||| || | |||| | ||| || ||||||||||||||||| |
Sbjct 357904 ACCATTAAAATGGCTGCGGATCGTGGTGCATTCATCGATCAGAGTCAATCGTTCAACATT 357845
Query 98133 TACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAG 98192
| ||||||||||||| ||| | |||| || ||||| |||||| | |||||
Sbjct 357844 CATGTTGCCGAGCCCAACTATGGCAAGCTGACGTCCATACATTTTTACTCGTGGAAGGCT 357785
Query 98193 GGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATAC 98247
||||| || || || ||||||||||| | || ||| |||| | || |||||||
Sbjct 357784 GGCCTTAAAACCGGAATGTACTATCTCCGCACGAAGCCGGCTGCGAACGCCATAC 357730
>seq202
Length=128089
Score = 93.3 bits (102), Expect = 6e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 98082 ATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCC 98141
|||||||| || | |||| | ||| || | ||||||||||||||| | | ||||||
Sbjct 57024 ATGGCTGCGGATCGTGGTGCATTCATCGATCGGAGTCAATCGTTCAACATTCATGTTGCC 56965
Query 98142 GAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAG 98201
||||||| ||| | |||| || ||||| |||||| | ||||| ||||| ||
Sbjct 56964 GAGCCCAACTAAGGCAAGCTGACGTCCATACATTTTTACTCGTGGAAGGCTGGCCTTAAA 56905
Query 98202 ACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATAC 98247
|| || ||||| ||||| | || ||| |||| | || |||||||
Sbjct 56904 ACCGGAATGTATTATCTCCGCACGAAGCCGGCTGCGAACGCCATAC 56859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741046639046560
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