Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq185 297 3e-75 seq815 188 1e-42 seq991 138 2e-27 seq202 93.3 6e-14 >seq185 Length=662383 Score = 297 bits (328), Expect = 3e-75 Identities = 576/845 (68%), Gaps = 24/845 (3%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| |||||||||||||||| || |||||||| |||||||||||||| | ||| | Sbjct 114816 AGGCCGAGGCCTCCTTTTGGACCGTGGAAGAGGTGGATCTGTCCAAGGATTTAACCGACT 114757 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 || | ||| | | || || || | || || || || | |||| ||||||| Sbjct 114756 GGCA---TCGCCTTAAGGATGACGAACGTCATTTCATCTCCCATGTGCTGGCGTTCTTTG 114700 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 ||| ||||||||| ||||||||||| || ||| | || ||| ||| ||| || | Sbjct 114699 CCGCCTCCGATGGCATCGTCAACGAGAACCTGGTCGAGCGTTTCAGTCAGGAGGTGCAGA 114640 Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 | |||||| ||||| || || ||||| ||| || |||||||| || ||||| | Sbjct 114639 TCACAGAGGCCCGCTGCTTCTATGGCTTCCAGATCGCCATGGAGAACGTCCATTCGGAGA 114580 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTA 125337 ||||| | ||||| |||| ||||| || |||||||| | || || |||| Sbjct 114579 TGTACAGTGTGCTGATCGACACTTACATCCGGGATCCGCATCAGCGGGACTACCTGTTTA 114520 Query 125338 ACGCAATCGACACGGTGCCGTCTAT-ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATC 125396 | || ||||| || ||||| | | | | |||| || | |||| | |||||| Sbjct 114519 ATGCCATCGAGACCATGCCGGCGGTGAAGCGCAAAG-CTGACTGGGCCCTGTCCTGGATC 114461 Query 125397 GATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGC 125453 | ||||||| | || | || | | | ||||| |||||||| |||||| Sbjct 114460 TC---CTCCAAGTCTGCCAACTTTGGAGAGCGGATCATTGCATTTGCCGCCGTCGAGGGC 114404 Query 125454 ATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCC 125513 |||||||| || || ||||| | || || ||||| ||||||||||| || ||||| Sbjct 114403 ATCTTCTTCAGCGGCAGCTTTGCCTCTATTTTCTGGCTGAAGAAGCGCGGCCTGATGCCT 114344 Query 125514 GGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 || ||||| | |||||| | || || || |||||||| || ||||| |||||||| Sbjct 114343 GGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCG 114284 Query 125574 ATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGG--TCA 125631 | || |||| | | ||||| |||||| | ||| | | | ||| Sbjct 114283 GTGCTGATGTTCC---AGCATCTG--------GTGCAGCGACCGCGTCGCGAGCGCATCA 114235 Query 125632 TCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGG 125691 || | || | || || ||| || ||||| ||||| | ||||| |||| || | Sbjct 114234 TCGAGATCATTCGTGACGCTGTGGACATTGAACAGGAGTTCTTGACCGATGCCCTGCCCG 114175 Query 125692 TCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATC 125751 | | |||| |||||||||||| | ||||||| ||||||| ||||||||||| |||| Sbjct 114174 TGAATCTGATCGGCATGAACTGCGACCTAATGTCGCAGTACATTGAGTTTGTGGCTGATC 114115 Query 125752 GTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCA 125811 | || || ||||||| | | || || |||||| ||||||| || || | |||| Sbjct 114114 GCCTGCTCGTCGAGTTGGGCGTTGGAAAAATCTACAACACCAAGAACCCGTTCAACTTCA 114055 Query 125812 TGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACA 125871 || | || || || || || |||||||||||||| ||||||||||| |||||||| Sbjct 114054 TGGAGATGATCTCGCTGGACGGCAAGACCAACTTTTTTGAGAAGAAGGTGGGCGAGTACC 113995 Query 125872 AACGC 125876 | ||| Sbjct 113994 AGCGC 113990 >seq815 Length=1480391 Score = 188 bits (208), Expect = 1e-42 Identities = 385/570 (68%), Gaps = 14/570 (2%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| || |||| ||| ||||| | || ||||||||||| || |||||| Sbjct 325540 TTGCGGAAGAAGATCACACCGGATCGGGGACCGCGCAGCGTCTTGTGCGTGGTGGTGGTC 325481 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| ||| || || || ||||| | | | || | | ||| || | Sbjct 325480 ACAATGTCGGCATATTCGAACGGCGATGGAATCAAACCGGCGGCCACAATGCCAGCCACA 325421 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || ||||||||||| || ||| || | | || ||||| ||||| || | Sbjct 325420 TGGGCCATATCGGCCATTAGATAGGCACCAACATCGTCACAAATCTGACGGAAACGGGCA 325361 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| | || | |||||| | ||||||| || || | | || ||| Sbjct 325360 TAGTCCAGCAGTCGGGAATAGCACGAGATGCCGGCAATAATAATCTGCGGACGGAAATTC 325301 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 || || |||||| || ||| | || || | || ||| |||| |||| ||||||||| Sbjct 325300 TTTGCTGCCTCGGCCAGCTTGTCGTAATCAATGATTCCCGTCTCCGGATTGACCTTGTAC 325241 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449 |||||||| ||||| |||| ||||| ||||| | || ||| ||| || Sbjct 325240 GGCATGCTCTCGAAGAAGATCGATGTGGCGGAGATCTTCTTGGTGGGCGTAAAGAAGCCA 325181 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 || || || || || || ||||| ||||| || |||||||| | | || || | Sbjct 325180 TGGGTAAGATGTCCACCATCGGGTAGATCCAGACCCATGATGCGGTCATGTGGCCGGCAG 325121 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || || || || || || |||||| || || || || || || ||| || ||| Sbjct 325120 ACGCCCGTATAGACAGCCAAATTGGCCGGGGAACCGGAATAAGGCTGGACATTGACGCCC 325061 Query 127570 CATTCGGACTCGTTCAAATTGAAC-GCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 || | | |||| | | |||||| |||| | || || | ||| || | ||||||||| Sbjct 325060 CACTTGTCCTCGCTGAGGTTGAACAGCTCACGGCCA-CGATTCTGGGCCAACAGTTCGAT 325002 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTA 127658 || |||||| |||||||| ||||||||||| Sbjct 325001 GCAATCGATGAACTCGTTGCCACCATAGTA 324972 >seq991 Length=691118 Score = 138 bits (152), Expect = 2e-27 Identities = 372/560 (66%), Gaps = 18/560 (3%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864 || || || | | ||| |||||| || || ||||| || | | ||| |||||| | | Sbjct 359182 ACGAATGGGACCTCCAATGGCCTCGTTCCCATGCTGCGAGTCTTCAA--CAATGTAGCGC 359125 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | ||||| ||||| ||| || || || ||||| | ||| |||||||||| || | Sbjct 359124 GTTACGTGGATCAGGGTGGCGGCAAGCGCCCTGGCGCCTTTGCCATCTACTTGGAGCCCT 359065 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||| | || |||||||| || | || || || ||| | || |||||| | Sbjct 359064 GGCATTCCGATGTTTTTGAATTCTTGGAACTGAAGAAGAACACCGGTAAGGAAGAGAATC 359005 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | || | || || |||||||| |||||| | || ||| | || ||||||||||| | | Sbjct 359004 GTGCTCGCGATTTATTTTATGCCCTCTGGATACCTGATCTCTTTATGAAGCGCGTTGAGG 358945 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 || ||||| || |||||||| || || ||||| ||| ||| |||| Sbjct 358944 CAAATGAGAACTGGTCGCTGATGTGCCCGCACAAGTGTCCCGGCCTGCAGGATGTTTGGG 358885 Query 97105 GCGAAGAGTTTGAGGCCAA--GTACACGGCCTACGAG---CAAG--AGGGCCGATACGTG 97157 |||| || ||||| |||| |||| |||||| ||| | ||| || || Sbjct 358884 GCGACGAATTTGA--CCAATTGTACCTCAAATACGAGGCCGAAGGAAAAGCCAAT-CG-- 358830 Query 97158 AGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 |||| || | || | |||||| |||||| | ||| ||||| |||||||| Sbjct 358829 -GACG-GTTAAGGCTCAGTCCCTGTGGTTCGCCATCATTGAGGCGCAGGTGGAGACTGGC 358772 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277 | ||| || || || | ||||||| | || | || ||||| || | | | ||| Sbjct 358771 AATCCTTATATGCTGTTCAAGGATGCATGCAACAGGAAGAGCAATCAGCAGAATGTTGGC 358712 Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337 ||||||||| || ||||| ||||| ||||| || ||||| | || || ||||| | Sbjct 358711 ACCATCAAGTGCAGTAATCTTTGCACAGAAATCGTTGAGTATTCGTCGCCCGACGAAATC 358652 Query 97338 GCAGTTTGCGTTCTGGCATC 97357 || |||||| |||||||| Sbjct 358651 GCCGTTTGCAACCTGGCATC 358632 Score = 132 bits (146), Expect = 7e-26 Identities = 317/475 (67%), Gaps = 6/475 (1%) Strand=Plus/Minus Query 97776 GGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTT 97835 ||| | || |||||| ||||||| || || ||||| ||||| ||||| |||| | | Sbjct 358201 GGTGTCAGGAACTCTCTGCTGGTCGCCCCCATGCCAACGGCATCCACTGCCCAGATAATG 358142 Query 97836 GGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCT 97895 |||||| ||||| || || |||| ||| |||| || || ||||| | || Sbjct 358141 GGCAATAACGAATCCTTCGAGCCGTACACCACAAATATCTATACACGACGCGTTCTCTCC 358082 Query 97896 GGAGAGTTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACGG--CTCAATCTGT 97953 || || || || || ||| ||| || | | || || |||| || | ||| Sbjct 358081 GGCGAATTCCAGGTGGTTAACCACCACCTGTTGAGGGATCTG--ACGGAGCTTGACTTGT 358024 Query 97954 GGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCA 98013 || | ||||| ||| | ||| || | || | ||| || ||||| || || Sbjct 358023 GGGATGATGATATGAAGAACCAGATAATTTCCAGCCGTGGCTCAATTCAGAATATCGAGG 357964 Query 98014 TCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGAT-TCCGACCAAGACG 98072 |||||| | | ||||| | |||||||| || |||||||| |||| | ||| | Sbjct 357963 CCATCCCCCAGCATGTGCGCGATCTGTACAAGACGGTGTGGGAGATCTCCGTC-AAGTCC 357905 Query 98073 CTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTG 98132 || | |||||||| || | |||| | ||| || ||||||||||||||||| | Sbjct 357904 ACCATTAAAATGGCTGCGGATCGTGGTGCATTCATCGATCAGAGTCAATCGTTCAACATT 357845 Query 98133 TACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAG 98192 | ||||||||||||| ||| | |||| || ||||| |||||| | ||||| Sbjct 357844 CATGTTGCCGAGCCCAACTATGGCAAGCTGACGTCCATACATTTTTACTCGTGGAAGGCT 357785 Query 98193 GGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATAC 98247 ||||| || || || ||||||||||| | || ||| |||| | || ||||||| Sbjct 357784 GGCCTTAAAACCGGAATGTACTATCTCCGCACGAAGCCGGCTGCGAACGCCATAC 357730 >seq202 Length=128089 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 98082 ATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCC 98141 |||||||| || | |||| | ||| || | ||||||||||||||| | | |||||| Sbjct 57024 ATGGCTGCGGATCGTGGTGCATTCATCGATCGGAGTCAATCGTTCAACATTCATGTTGCC 56965 Query 98142 GAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAG 98201 ||||||| ||| | |||| || ||||| |||||| | ||||| ||||| || Sbjct 56964 GAGCCCAACTAAGGCAAGCTGACGTCCATACATTTTTACTCGTGGAAGGCTGGCCTTAAA 56905 Query 98202 ACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATAC 98247 || || ||||| ||||| | || ||| |||| | || ||||||| Sbjct 56904 ACCGGAATGTATTATCTCCGCACGAAGCCGGCTGCGAACGCCATAC 56859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741046639046560