Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq98 93.3 4e-14 seq1117 82.4 6e-11 >seq98 Length=20832 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| |||| | | ||||| ||||| ||||| ||||| || || || ||||||| Sbjct 12757 TTCCTCCGCGCAGACGGAGCACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCCG 12816 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || || | ||||||||||| || || || |||| || | |||||| || || Sbjct 12817 ACAGGGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGGG 12876 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| ||||| || || | | | || ||| ||||||| Sbjct 12877 GGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTTTCAATGGTGTCGGAAGGCTCCA 12936 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTT 19043 || | ||| ||||| || || || || ||||| ||||| || ||||||| Sbjct 12937 CCTCCAGGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTT 12987 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| || | | | ||||| ||||| || |||||||| ||||| ||||| || | Sbjct 12303 TTCCTCCACGGAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGG 12362 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || || | |||||||||||||| || || |||| || | |||||| || || Sbjct 12363 ACAGAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGGG 12422 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| ||||| || || | | | || ||| ||||||| Sbjct 12423 GGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTTTCAATGGTGTCGGAAGGCTCCA 12482 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| ||||| || || || | ||| || || || || |||||| Sbjct 12483 CCTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCATT 12532 >seq1117 Length=387944 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| || | | | ||||| ||||| ||||| ||||| || || || ||||||| Sbjct 174372 TTCCTCCACGGAGACGGAGCACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCCG 174431 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || || | ||||||||||| || || ||| |||| || | |||||| || || Sbjct 174432 ACAGGGTGCGCCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGGTCTGGGG 174491 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| ||||| || || | | | || ||| ||||||| Sbjct 174492 GGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCCA 174551 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | |||||||| || || || | ||| || || || || |||||| Sbjct 174552 CCTCCAAAGTAATGGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCATT 174601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414565948666264