Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq98 93.3 4e-14
seq1117 82.4 6e-11
>seq98
Length=20832
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
||||||| |||| | | ||||| ||||| ||||| ||||| || || || |||||||
Sbjct 12757 TTCCTCCGCGCAGACGGAGCACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCCG 12816
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
|| || | ||||||||||| || || || |||| || | |||||| || ||
Sbjct 12817 ACAGGGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGGG 12876
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | ||||| ||||| ||||| || || | | | || ||| |||||||
Sbjct 12877 GGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTTTCAATGGTGTCGGAAGGCTCCA 12936
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTT 19043
|| | ||| ||||| || || || || ||||| ||||| || |||||||
Sbjct 12937 CCTCCAGGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTT 12987
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
||||||| || | | | ||||| ||||| || |||||||| ||||| ||||| || |
Sbjct 12303 TTCCTCCACGGAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGG 12362
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
|| || | |||||||||||||| || || |||| || | |||||| || ||
Sbjct 12363 ACAGAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGGG 12422
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | ||||| ||||| ||||| || || | | | || ||| |||||||
Sbjct 12423 GGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTTTCAATGGTGTCGGAAGGCTCCA 12482
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| | ||| ||||| || || || | ||| || || || || ||||||
Sbjct 12483 CCTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCATT 12532
>seq1117
Length=387944
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
||||||| || | | | ||||| ||||| ||||| ||||| || || || |||||||
Sbjct 174372 TTCCTCCACGGAGACGGAGCACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCCG 174431
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
|| || | ||||||||||| || || ||| |||| || | |||||| || ||
Sbjct 174432 ACAGGGTGCGCCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGGTCTGGGG 174491
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | ||||| ||||| ||||| || || | | | || ||| |||||||
Sbjct 174492 GGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCCA 174551
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| | |||||||| || || || | ||| || || || || ||||||
Sbjct 174552 CCTCCAAAGTAATGGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCATT 174601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414565948666264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |