Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq991 165 2e-35 seq185 111 4e-19 >seq991 Length=691118 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || || || || |||||||| ||||||||||| || || | || ||| Sbjct 450712 AGCACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCT 450653 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | ||| ||||| ||||| ||||||||||| ||| Sbjct 450652 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 450593 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||||| |||||||| | || || ||||| ||||| || || || ||| Sbjct 450592 TGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTC 450533 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGT 104566 || || || || || || || || |||||||| |||||| Sbjct 450532 TTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTTGTGT 450494 >seq185 Length=662383 Score = 111 bits (122), Expect = 4e-19 Identities = 350/537 (65%), Gaps = 13/537 (2%) Strand=Plus/Minus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||||| || || |||||||| || ||||| || |||||||| | || |||| || | Sbjct 114816 AGGCCGAGGCCTCCTTTTGGACCGTGGAAGAGGTGGATCTGTCCAAGGATTTAACCGACT 114757 Query 268812 GGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG 268871 || | | || || ||| | || || || || | || ||||| ||||| | Sbjct 114756 GGCATCGCCTTAAGGATGACGAACGTCATTTCATCTCCCATGTGCTGGCGTTCTTTGCCG 114697 Query 268872 TTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTC 268931 ||||| ||||| ||||| || || || ||| ||| |||| ||||| ||||| Sbjct 114696 CCTCCGATGGCATCGTCAACGAGAACCTGGTCGAGCGTTTCAGTCAGGAGGTGCAGATCA 114637 Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991 | || ||| | || || || || |||||||| || || || || | ||||| ||||||| Sbjct 114636 CAGAGGCCCGCTGCTTCTATGGCTTCCAGATCGCCATGGAGAACGTCCATTCGGAGATGT 114577 Query 268992 ACAGTCTATTAATAGATACTTATATAGATGAT----AACAACGAAAAGAAAAGACTATTT 269047 ||||| | | || || ||||| || ||| | || || | | || ||| Sbjct 114576 ACAGTGTGCTGATCGACACTTACATCCGGGATCCGCATCAGCG----GGACTACCTGTTT 114521 Query 269048 TCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT 269106 | | || ||| || ||| |||| ||| |||| ||||| ||| ||||| Sbjct 114520 AATGCCATCGAG-ACCATGCCGGCGGTGAAGCGCAAAGCTGACTGGGCCCTGTCCTGGAT 114462 Query 269107 AAAC-GATAGCGCGCC--TTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTAT 269163 | || ||| | ||||| || | |||| |||||||| || || || || Sbjct 114461 CTCCTCCAAGTCTGCCAACTTTGGAGAGCGGATCATTGCATTTGCCGCCGTCGAGGGCAT 114402 Query 269164 ATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGG 269223 ||||| || |||||| |||| || ||| ||||||| | ||||| ||||| || Sbjct 114401 CTTCTTCAGCGGCAGCTTTGCCTCTATTTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGG 114342 Query 269224 ATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280 | || ||||| ||||| | || | | ||||| ||| | ||||||||||| || Sbjct 114341 CCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGC 114285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151378395892048