Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq977 118 9e-22 >seq977 Length=388812 Score = 118 bits (130), Expect = 9e-22 Identities = 182/255 (71%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCT-CTTG 5298 ||||| || |||||||| || ||||| || ||||| |||| || ||| || Sbjct 370697 CCGGTGGATCCGAATCCGCCCTCCCCGCGCTCAGTGTCCTCCAGCTTGTCGACCAGCTCC 370756 Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358 | || | || | | ||||||||||| || | ||| || || | ||| || ||| || Sbjct 370757 AGCTCC-GGATAGAAGATGCGTTCGCAGATGAACTGGGCGATTCGGTCACCGCGCTTCAC 370815 Query 5359 CTCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCT 5416 ||| || || |||||| ||| ||||||||||| || | ||||| |||||||| Sbjct 370816 CTCGAACTCCAC--TTCCGAGTGGTTGAACAGCACCACACCCAGGTTGCCGCGGTAGTCC 370873 Query 5417 TCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGT 5476 ||||| | |||||||| |||||||||||||||| || || || || ||||| ||||| Sbjct 370874 TCGTCCACCACGCCAGCTCCCACGTCGATAAAGTTCTTCACGGCGAGACCGGAGCGTGGG 370933 Query 5477 GCTATGCGTCCGTAG 5491 || | || |||||| Sbjct 370934 GCCACCCGACCGTAG 370948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447742810630720