Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq977 118 9e-22
>seq977
Length=388812
Score = 118 bits (130), Expect = 9e-22
Identities = 182/255 (71%), Gaps = 6/255 (2%)
Strand=Plus/Plus
Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCT-CTTG 5298
||||| || |||||||| || ||||| || ||||| |||| || ||| ||
Sbjct 370697 CCGGTGGATCCGAATCCGCCCTCCCCGCGCTCAGTGTCCTCCAGCTTGTCGACCAGCTCC 370756
Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358
| || | || | | ||||||||||| || | ||| || || | ||| || ||| ||
Sbjct 370757 AGCTCC-GGATAGAAGATGCGTTCGCAGATGAACTGGGCGATTCGGTCACCGCGCTTCAC 370815
Query 5359 CTCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCT 5416
||| || || |||||| ||| ||||||||||| || | ||||| ||||||||
Sbjct 370816 CTCGAACTCCAC--TTCCGAGTGGTTGAACAGCACCACACCCAGGTTGCCGCGGTAGTCC 370873
Query 5417 TCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGT 5476
||||| | |||||||| |||||||||||||||| || || || || ||||| |||||
Sbjct 370874 TCGTCCACCACGCCAGCTCCCACGTCGATAAAGTTCTTCACGGCGAGACCGGAGCGTGGG 370933
Query 5477 GCTATGCGTCCGTAG 5491
|| | || ||||||
Sbjct 370934 GCCACCCGACCGTAG 370948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447742810630720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |