Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq977 172 5e-38 >seq977 Length=388812 Score = 172 bits (190), Expect = 5e-38 Identities = 215/290 (74%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||||||||| | || | || || || ||||| | ||| Sbjct 370694 ACGCCGGTGGATCCGAATCCGCCCTCCCCGCGCTCAGTGTCCTCCAGCTTGTCGACCAGC 370753 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 |||| || || | | || ||| |||||||| | ||| || |||||||| || ||| Sbjct 370754 TCCAGCTCCGGATA-GAAGATGCGTTCGCAGATGAACTGGGCGATTCGGTCACCGCGCTT 370812 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 |||||||| || | |||| ||||||||||||||| |||| ||||||||||||| Sbjct 370813 CACCTCGAACTCCACTT--CCGAGTGGTTGAACAGCACCACACCCAGGTTGCCGCGGTAG 370870 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || |||| | |||||| || ||||||||||| |||| ||| || || || |||||||| Sbjct 370871 TCCTCGTCCACCACGCCAGCTCCCACGTCGATAAAGTTCTTCACGGCGAGACCGGAGCGT 370930 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || ||||| || |||||| | || ||||| | ||| | ||||||||| || Sbjct 370931 GGGGCCACCCGACCGTAGGAGCCCTCGGGCACCTGGACCTGCAGGTCGGT 370980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430047292813472