Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq10 123 1e-23 seq1339 120 2e-22 seq64 120 2e-22 seq41 113 2e-20 >seq10 Length=6880660 Score = 123 bits (136), Expect = 1e-23 Identities = 89/102 (87%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||| | || ||| ||||||| | ||||||||||| |||||||||| |||||||| Sbjct 627787 GAAATTAAAAAATAA-AAAAAATTATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTC 627729 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||||||||||||||||||| Sbjct 627728 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 627687 Score = 122 bits (134), Expect = 5e-23 Identities = 80/88 (91%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | | ||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 620687 AAAAAATTAGACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 620746 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||||||||| Sbjct 620747 CGCTCTAACCAACTGAGCTAATGGGCCG 620774 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5425693 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5425634 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 5425633 TGAGCTAATGGGCC 5425620 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 627146 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 627205 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 627206 CTGAGCTAATGGGCC 627220 >seq1339 Length=5788136 Score = 120 bits (132), Expect = 2e-22 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 3752101 AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 3752042 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 3752041 CAACTGAGCTAATGGGCC 3752024 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| | || ||| |||| |||||||||| |||||||||| |||||||||||||||| Sbjct 3754711 TTATTTAACAATAAAATATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 3754652 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||||||||||||||||| Sbjct 3754651 AGCACGACGCTCTAACCAACTGAGCTAATGGGCC 3754618 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 3751903 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3751844 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 3751843 CTGAGCTAATGGGCC 3751829 Score = 114 bits (126), Expect = 7e-21 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| |||||| | |||||||||| |||||||||| ||||||||||||||||| Sbjct 3752337 AAATAAGGAAAAATAA---TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 3752281 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 3752280 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 3752248 >seq64 Length=3330565 Score = 120 bits (132), Expect = 2e-22 Identities = 89/102 (87%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||| || || ||||||||| || ||||||||||| |||||||||| |||||||| Sbjct 2674495 AAATTTAAAAAATATAAAAAATAAAGCTTGGCCCATGAG-GGATCGAACCCGCGACCTTC 2674437 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||||||||||||||||||| Sbjct 2674436 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 2674395 >seq41 Length=2292486 Score = 113 bits (124), Expect = 2e-20 Identities = 87/103 (84%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||| ||| || || ||||| | | | |||||||||| |||||||||| |||||||| Sbjct 1615903 AAAAATAAAAGAAAAAAAAAGTAATTTCTGGCCCATGAGGGGATCGAACCCGCGACCTTC 1615844 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||| |||| |||||||||||||||| Sbjct 1615843 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 1615801 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261486878531056