Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 9e-12 >seq3 Length=23743 Score = 84.2 bits (92), Expect = 9e-12 Identities = 208/307 (68%), Gaps = 13/307 (4%) Strand=Plus/Minus Query 11207 TCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTG-CCACTTGCGGGTGCGTAGGCTGCC 11265 || ||| |||||| |||| |||||||| ||||| ||| || | ||| | ||| ||| Sbjct 16524 TCTGTGGTGTAGTTTTCCTTACCGTCCTG-CCCTGTCCATTTTCTGGTTTGCAGGGAGCC 16466 Query 11266 TTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCC 11325 ||| | || |||| | ||| || |||||| | | | || | || |||||||| | Sbjct 16465 TTCCAGATAAACCTTGCGGCCTTTGCGCAGGAAACGTTCAGCCACATCTGCCAGCCGTTC 16406 Query 11326 A---AAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTG-T 11381 | || | || || || ||||| || ||||| || || | | || | ||| | | Sbjct 16405 ATTAAAAATGACTACGCGATGCCATTCTGTGCGTTCACGCCGTTCACCAGA-TGCGCGGT 16347 Query 11382 CTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTT---CCGCCCGGGG 11438 | ||||| | ||||||||||| ||| || | ||| || |||| |||| | || Sbjct 16346 CGTTCCATGTGTCGCTAGTGGCTAGA--GA-GAAGGAAACAATCTTTGCACCGCTCTGGC 16290 Query 11439 TAGATCTTGCGTCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTTCACTCCGC 11498 | | | | ||||| || | |||||||| ||||||||| || |||||||| || | || Sbjct 16289 TGGTACGAACATCTGGGTCTTTGCCCAGATTGCCGACCAGAATAACCTTGTTAACGCTGC 16230 Query 11499 GTGCCAT 11505 ||||| Sbjct 16229 CCGCCAT 16223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208495754290096