Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_006634.1
Length=14975
Score E
Sequences producing significant alignments: (Bits) Value
seq650 95.1 1e-15
seq1339 89.7 5e-14
seq1258 87.8 2e-13
seq1065 87.8 2e-13
seq1344 86.0 6e-13
seq1156 78.8 9e-11
>seq650
Length=47925
Score = 95.1 bits (104), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 12/134 (9%)
Strand=Plus/Plus
Query 390 ATAGAATATTCTACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAAC 449
|||||| || ||||||| ||||||||||||||| |||| | ||||||||||| || |||
Sbjct 1290 ATAGAAAATCCTACAAATAACAGTTTCACTGTACAATGCCTCGCCAAGTACATGTTTAAC 1349
Query 450 TATTGTAACAGAGACAATGATAACCTCATTATTG-----Caaaaataaaaaaa----TCT 500
|||||| ||| |||||||||| ||| || | |||||| ||| | |||
Sbjct 1350 TATTGTTACA---ACAATGATAAATGTATTTCTGTGATCCTAAAATATAAAGAAATGTCT 1406
Query 501 GATCTTTACAAAAA 514
||| ||||||||||
Sbjct 1407 GATATTTACAAAAA 1420
>seq1339
Length=5788136
Score = 89.7 bits (98), Expect = 5e-14
Identities = 79/98 (81%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 400 CTACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAACTATTGTAACA 459
||||||| ||||||||||||||| |||||| ||||||||||| || ||||||||| ||
Sbjct 4722311 CTACAAATAACAGTTTCACTGTACAATGTCTCGCCAAGTACATGTTTAACTATTGTTAC- 4722369
Query 460 GAGACAATGATAACCTCATTATTGCaaaaataaaaaaa 497
| |||||||||| ||| || ||| ||| |||||
Sbjct 4722370 -AAACAATGATAAATGTATTTCTGTAAACATATAAAAA 4722406
>seq1258
Length=1352723
Score = 87.8 bits (96), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 15/138 (11%)
Strand=Plus/Minus
Query 390 ATAGAATATTCT-ACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448
|||||| | ||| ||||| ||||||||||||||| |||||| ||||||||||| || ||
Sbjct 18862 ATAGAAAAATCTTACAAATAACAGTTTCACTGTACAATGTCTCGCCAAGTACATGTTTAA 18803
Query 449 CTATTGTAACAGAGACAATGATAACCTCATTATTGCaaaaataaaa---aaa-------- 497
||||||| ||| | ||||||| ||| || ||| |||||| |||
Sbjct 18802 CTATTGTTACA---TCGATGATAAATGTATTTCTGTAAACATAAAATATAAAAGAAAATC 18746
Query 498 TCTGATCTTTACAAAAAA 515
|||||| |||||||||||
Sbjct 18745 TCTGATATTTACAAAAAA 18728
Score = 86.0 bits (94), Expect = 6e-13
Identities = 104/138 (75%), Gaps = 14/138 (10%)
Strand=Plus/Plus
Query 390 ATAGAATATTCT-ACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448
|||||| | ||| ||||| ||||||||||||||| |||||| |||||| |||| || ||
Sbjct 13422 ATAGAAAAATCTTACAAACAACAGTTTCACTGTACAATGTCTCGCCAATTACATGTTTAA 13481
Query 449 CTATTGTAACAGAGACAATGATAACCTCATTATTG----Ca-aaaata------aaaaaa 497
||||||| || | |||||||||| ||| || || |||||| ||||
Sbjct 13482 CTATTGTTAC--AAACAATGATAAATGTATTTCTGTGAACATAAAATAGAAAAGAAAATC 13539
Query 498 TCTGATCTTTACAAAAAA 515
|||||| |||||||||||
Sbjct 13540 TCTGATATTTACAAAAAA 13557
Score = 82.4 bits (90), Expect = 7e-12
Identities = 103/138 (75%), Gaps = 14/138 (10%)
Strand=Plus/Minus
Query 390 ATAGAATA-TTCTACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448
|||||| | ||||||||| |||||||| |||||| |||||| ||||||||||| || |
Sbjct 482853 ATAGAAAAATTCTACAAATAACAGTTTAACTGTACAATGTCTCGCCAAGTACATGTTTAC 482794
Query 449 CTATTGTAACAGAGACAATGATAACCTCATTATTG----Ca-aaaata------aaaaaa 497
||||||| || | ||||||||| ||| || || |||||| |||||
Sbjct 482793 CTATTGTTAC--AAACAATGATAGGTGTATTTCTGTGAACATAAAATATAAAAGAAAAAC 482736
Query 498 TCTGATCTTTACAAAAAA 515
|||||| || ||||||||
Sbjct 482735 TCTGATATTAACAAAAAA 482718
>seq1065
Length=220035
Score = 87.8 bits (96), Expect = 2e-13
Identities = 71/84 (85%), Gaps = 3/84 (4%)
Strand=Plus/Plus
Query 390 ATAGAATATTC-TACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448
|||||| | || |||||| ||||||||||||||| |||||| ||||||||||| || ||
Sbjct 31244 ATAGAAAAATCCTACAAATAACAGTTTCACTGTACAATGTCTCGCCAAGTACAAGTTTAA 31303
Query 449 CTATTGTAACAGAGACAATGATAA 472
||||||| || | ||||||||||
Sbjct 31304 CTATTGTTAC--AAACAATGATAA 31325
Score = 82.4 bits (90), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 3/84 (4%)
Strand=Plus/Plus
Query 390 ATAGAATATTC-TACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448
|||||| | || |||||| ||||||||||||||| |||||| ||||||||||| || ||
Sbjct 11454 ATAGAAAAATCCTACAAATAACAGTTTCACTGTACAATGTCTCGCCAAGTACAAGTTTAA 11513
Query 449 CTATTGTAACAGAGACAATGATAA 472
||||||| || | ||||| ||||
Sbjct 11514 CTATTGTTAC--AAACAATAATAA 11535
>seq1344
Length=5663769
Score = 86.0 bits (94), Expect = 6e-13
Identities = 104/138 (75%), Gaps = 14/138 (10%)
Strand=Plus/Minus
Query 390 ATAGAATATTC-TACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448
|||||| | || |||||| |||||||| |||||| |||||| ||||||||||| || ||
Sbjct 319877 ATAGAAAAATCATACAAATAACAGTTTTACTGTACAATGTCTCGCCAAGTACATGTTTAA 319818
Query 449 CTATTGTAACAGAGACAATGATAACCTCATTATTG----Ca-aaaata------aaaaaa 497
||||||| || | |||||||||| ||| || || |||||| ||||
Sbjct 319817 CTATTGTTAC--AAACAATGATAAATGTATTTCTGTGAACATAAAATATAAAAGAAAATC 319760
Query 498 TCTGATCTTTACAAAAAA 515
|||||| |||||||||||
Sbjct 319759 TCTGATATTTACAAAAAA 319742
>seq1156
Length=825589
Score = 78.8 bits (86), Expect = 9e-11
Identities = 70/84 (83%), Gaps = 4/84 (5%)
Strand=Plus/Minus
Query 390 ATAGAATATTC-TACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448
|||||| | || |||||| ||||||||||||||| |||||| |||| |||||| || ||
Sbjct 689051 ATAGAAAAATCCTACAAATAACAGTTTCACTGTACAATGTCTCGCC-AGTACATGTTTAA 688993
Query 449 CTATTGTAACAGAGACAATGATAA 472
||||||| || | ||||||||||
Sbjct 688992 CTATTGTTAC--AAACAATGATAA 688971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 47800850530664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |