Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_006634.1 Length=14975 Score E Sequences producing significant alignments: (Bits) Value seq650 95.1 1e-15 seq1339 89.7 5e-14 seq1258 87.8 2e-13 seq1065 87.8 2e-13 seq1344 86.0 6e-13 seq1156 78.8 9e-11 >seq650 Length=47925 Score = 95.1 bits (104), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 12/134 (9%) Strand=Plus/Plus Query 390 ATAGAATATTCTACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAAC 449 |||||| || ||||||| ||||||||||||||| |||| | ||||||||||| || ||| Sbjct 1290 ATAGAAAATCCTACAAATAACAGTTTCACTGTACAATGCCTCGCCAAGTACATGTTTAAC 1349 Query 450 TATTGTAACAGAGACAATGATAACCTCATTATTG-----Caaaaataaaaaaa----TCT 500 |||||| ||| |||||||||| ||| || | |||||| ||| | ||| Sbjct 1350 TATTGTTACA---ACAATGATAAATGTATTTCTGTGATCCTAAAATATAAAGAAATGTCT 1406 Query 501 GATCTTTACAAAAA 514 ||| |||||||||| Sbjct 1407 GATATTTACAAAAA 1420 >seq1339 Length=5788136 Score = 89.7 bits (98), Expect = 5e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 400 CTACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAACTATTGTAACA 459 ||||||| ||||||||||||||| |||||| ||||||||||| || ||||||||| || Sbjct 4722311 CTACAAATAACAGTTTCACTGTACAATGTCTCGCCAAGTACATGTTTAACTATTGTTAC- 4722369 Query 460 GAGACAATGATAACCTCATTATTGCaaaaataaaaaaa 497 | |||||||||| ||| || ||| ||| ||||| Sbjct 4722370 -AAACAATGATAAATGTATTTCTGTAAACATATAAAAA 4722406 >seq1258 Length=1352723 Score = 87.8 bits (96), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 15/138 (11%) Strand=Plus/Minus Query 390 ATAGAATATTCT-ACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448 |||||| | ||| ||||| ||||||||||||||| |||||| ||||||||||| || || Sbjct 18862 ATAGAAAAATCTTACAAATAACAGTTTCACTGTACAATGTCTCGCCAAGTACATGTTTAA 18803 Query 449 CTATTGTAACAGAGACAATGATAACCTCATTATTGCaaaaataaaa---aaa-------- 497 ||||||| ||| | ||||||| ||| || ||| |||||| ||| Sbjct 18802 CTATTGTTACA---TCGATGATAAATGTATTTCTGTAAACATAAAATATAAAAGAAAATC 18746 Query 498 TCTGATCTTTACAAAAAA 515 |||||| ||||||||||| Sbjct 18745 TCTGATATTTACAAAAAA 18728 Score = 86.0 bits (94), Expect = 6e-13 Identities = 104/138 (75%), Gaps = 14/138 (10%) Strand=Plus/Plus Query 390 ATAGAATATTCT-ACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448 |||||| | ||| ||||| ||||||||||||||| |||||| |||||| |||| || || Sbjct 13422 ATAGAAAAATCTTACAAACAACAGTTTCACTGTACAATGTCTCGCCAATTACATGTTTAA 13481 Query 449 CTATTGTAACAGAGACAATGATAACCTCATTATTG----Ca-aaaata------aaaaaa 497 ||||||| || | |||||||||| ||| || || |||||| |||| Sbjct 13482 CTATTGTTAC--AAACAATGATAAATGTATTTCTGTGAACATAAAATAGAAAAGAAAATC 13539 Query 498 TCTGATCTTTACAAAAAA 515 |||||| ||||||||||| Sbjct 13540 TCTGATATTTACAAAAAA 13557 Score = 82.4 bits (90), Expect = 7e-12 Identities = 103/138 (75%), Gaps = 14/138 (10%) Strand=Plus/Minus Query 390 ATAGAATA-TTCTACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448 |||||| | ||||||||| |||||||| |||||| |||||| ||||||||||| || | Sbjct 482853 ATAGAAAAATTCTACAAATAACAGTTTAACTGTACAATGTCTCGCCAAGTACATGTTTAC 482794 Query 449 CTATTGTAACAGAGACAATGATAACCTCATTATTG----Ca-aaaata------aaaaaa 497 ||||||| || | ||||||||| ||| || || |||||| ||||| Sbjct 482793 CTATTGTTAC--AAACAATGATAGGTGTATTTCTGTGAACATAAAATATAAAAGAAAAAC 482736 Query 498 TCTGATCTTTACAAAAAA 515 |||||| || |||||||| Sbjct 482735 TCTGATATTAACAAAAAA 482718 >seq1065 Length=220035 Score = 87.8 bits (96), Expect = 2e-13 Identities = 71/84 (85%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 390 ATAGAATATTC-TACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448 |||||| | || |||||| ||||||||||||||| |||||| ||||||||||| || || Sbjct 31244 ATAGAAAAATCCTACAAATAACAGTTTCACTGTACAATGTCTCGCCAAGTACAAGTTTAA 31303 Query 449 CTATTGTAACAGAGACAATGATAA 472 ||||||| || | |||||||||| Sbjct 31304 CTATTGTTAC--AAACAATGATAA 31325 Score = 82.4 bits (90), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 390 ATAGAATATTC-TACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448 |||||| | || |||||| ||||||||||||||| |||||| ||||||||||| || || Sbjct 11454 ATAGAAAAATCCTACAAATAACAGTTTCACTGTACAATGTCTCGCCAAGTACAAGTTTAA 11513 Query 449 CTATTGTAACAGAGACAATGATAA 472 ||||||| || | ||||| |||| Sbjct 11514 CTATTGTTAC--AAACAATAATAA 11535 >seq1344 Length=5663769 Score = 86.0 bits (94), Expect = 6e-13 Identities = 104/138 (75%), Gaps = 14/138 (10%) Strand=Plus/Minus Query 390 ATAGAATATTC-TACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448 |||||| | || |||||| |||||||| |||||| |||||| ||||||||||| || || Sbjct 319877 ATAGAAAAATCATACAAATAACAGTTTTACTGTACAATGTCTCGCCAAGTACATGTTTAA 319818 Query 449 CTATTGTAACAGAGACAATGATAACCTCATTATTG----Ca-aaaata------aaaaaa 497 ||||||| || | |||||||||| ||| || || |||||| |||| Sbjct 319817 CTATTGTTAC--AAACAATGATAAATGTATTTCTGTGAACATAAAATATAAAAGAAAATC 319760 Query 498 TCTGATCTTTACAAAAAA 515 |||||| ||||||||||| Sbjct 319759 TCTGATATTTACAAAAAA 319742 >seq1156 Length=825589 Score = 78.8 bits (86), Expect = 9e-11 Identities = 70/84 (83%), Gaps = 4/84 (5%) Strand=Plus/Minus Query 390 ATAGAATATTC-TACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAA 448 |||||| | || |||||| ||||||||||||||| |||||| |||| |||||| || || Sbjct 689051 ATAGAAAAATCCTACAAATAACAGTTTCACTGTACAATGTCTCGCC-AGTACATGTTTAA 688993 Query 449 CTATTGTAACAGAGACAATGATAA 472 ||||||| || | |||||||||| Sbjct 688992 CTATTGTTAC--AAACAATGATAA 688971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47800850530664