Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq1339 89.7 1e-13 seq650 89.7 1e-13 seq1065 87.8 5e-13 seq1344 80.6 7e-11 seq1258 80.6 7e-11 seq1156 80.6 7e-11 >seq1339 Length=5788136 Score = 89.7 bits (98), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 36278 tttttttatttttGCAATAATGAGGATATCATTGTCTCTGTTACAATAGTTGGACGTGTA 36337 ||||| ||| ||| || ||| ||||||||| | || ||||||||| || |||| Sbjct 4722406 TTTTTATATGTTTACAGAAATACATTTATCATTGTTT--GTAACAATAGTTAAACATGTA 4722349 Query 36338 CTTGGCGCGACATTTTACAGTGAAACTGTTTTTTGTAGGTT 36378 ||||||| |||||| ||||||||||||||| |||||||||| Sbjct 4722348 CTTGGCGAGACATTGTACAGTGAAACTGTTATTTGTAGGTT 4722308 Score = 84.2 bits (92), Expect = 6e-12 Identities = 81/103 (79%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 35073 AAATCCCACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAACTATTG 35132 ||| || ||||| ||||||||||||||| |||||| ||||||||||| || |||||||| Sbjct 4722306 AAAACCTACAAATAACAGTTTCACTGTACAATGTCTCGCCAAGTACATGTTTAACTATTG 4722365 Query 35133 TAACAGAGACAATGATATCCTCATTATTGCaaaaataaaaaaa 35175 | || | ||||||||| ||| || ||| ||| ||||| Sbjct 4722366 TTAC--AAACAATGATAAATGTATTTCTGTAAACATATAAAAA 4722406 >seq650 Length=47925 Score = 89.7 bits (98), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 12/138 (9%) Strand=Plus/Plus Query 35064 AAATATGTCAAATCCCACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTC 35123 |||||| |||||| ||||| ||||||||||||||| |||| | ||||||||||| || Sbjct 1286 AAATATAGAAAATCCTACAAATAACAGTTTCACTGTACAATGCCTCGCCAAGTACATGTT 1345 Query 35124 CAACTATTGTAACAGAGACAATGATATCCTCATTATTG-----Caaaaataaaaaaa--- 35175 ||||||||| ||| ||||||||| ||| || | |||||| ||| | Sbjct 1346 TAACTATTGTTACA---ACAATGATAAATGTATTTCTGTGATCCTAAAATATAAAGAAAT 1402 Query 35176 -TCTGATCTTTACAAAAA 35192 |||||| |||||||||| Sbjct 1403 GTCTGATATTTACAAAAA 1420 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/73 (85%), Gaps = 3/73 (4%) Strand=Plus/Minus Query 36304 TATCATTGTCTCTGTTACAATAGTTGGACGTGTACTTGGCGCGACATTTTACAGTGAAAC 36363 ||||||||| ||| ||||||||| || ||||||||||| | |||| ||||||||||| Sbjct 1368 TATCATTGT---TGTAACAATAGTTAAACATGTACTTGGCGAGGCATTGTACAGTGAAAC 1312 Query 36364 TGTTTTTTGTAGG 36376 |||| |||||||| Sbjct 1311 TGTTATTTGTAGG 1299 >seq1065 Length=220035 Score = 87.8 bits (96), Expect = 5e-13 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 36304 TATCATTGTCTCTGTTACAATAGTTGGACGTGTACTTGGCGCGACATTTTACAGTGAAAC 36363 ||||||||| | || ||||||||| || ||||||||||| |||||| ||||||||||| Sbjct 31324 TATCATTGTTT--GTAACAATAGTTAAACTTGTACTTGGCGAGACATTGTACAGTGAAAC 31267 Query 36364 TGTTTTTTGTAGGTTGAATTTAGGTTTTCATA 36395 |||| |||||||| | | || |||||||| Sbjct 31266 TGTTATTTGTAGGATTTTTCTATATTTTCATA 31235 Score = 87.8 bits (96), Expect = 5e-13 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 35064 AAATAT-GTCAAATCCCACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGT 35122 |||||| | |||||| ||||| ||||||||||||||| |||||| ||||||||||| || Sbjct 31240 AAATATAGAAAAATCCTACAAATAACAGTTTCACTGTACAATGTCTCGCCAAGTACAAGT 31299 Query 35123 CCAACTATTGTAACAGAGACAATGATA 35149 ||||||||| || | ||||||||| Sbjct 31300 TTAACTATTGTTAC--AAACAATGATA 31324 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/77 (84%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 35073 AAATCCCACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGTCCAACTATTG 35132 |||||| ||||| ||||||||||||||| |||||| ||||||||||| || |||||||| Sbjct 11460 AAATCCTACAAATAACAGTTTCACTGTACAATGTCTCGCCAAGTACAAGTTTAACTATTG 11519 Query 35133 TAACAGAGACAATGATA 35149 | || | ||||| ||| Sbjct 11520 TTAC--AAACAATAATA 11534 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/73 (85%), Gaps = 2/73 (3%) Strand=Plus/Minus Query 36304 TATCATTGTCTCTGTTACAATAGTTGGACGTGTACTTGGCGCGACATTTTACAGTGAAAC 36363 ||| ||||| | || ||||||||| || ||||||||||| |||||| ||||||||||| Sbjct 11534 TATTATTGTTT--GTAACAATAGTTAAACTTGTACTTGGCGAGACATTGTACAGTGAAAC 11477 Query 36364 TGTTTTTTGTAGG 36376 |||| |||||||| Sbjct 11476 TGTTATTTGTAGG 11464 >seq1344 Length=5663769 Score = 80.6 bits (88), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 14/142 (10%) Strand=Plus/Minus Query 35064 AAATAT-GTCAAATCCCACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGT 35122 |||||| | ||||| ||||| |||||||| |||||| |||||| ||||||||||| || Sbjct 319881 AAATATAGAAAAATCATACAAATAACAGTTTTACTGTACAATGTCTCGCCAAGTACATGT 319822 Query 35123 CCAACTATTGTAACAGAGACAATGATATCCTCATTATTG----Ca-aaaata------aa 35171 ||||||||| || | ||||||||| ||| || || |||||| || Sbjct 319821 TTAACTATTGTTAC--AAACAATGATAAATGTATTTCTGTGAACATAAAATATAAAAGAA 319764 Query 35172 aaaaTCTGATCTTTACAAAAAA 35193 || |||||| ||||||||||| Sbjct 319763 AATCTCTGATATTTACAAAAAA 319742 >seq1258 Length=1352723 Score = 80.6 bits (88), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 14/142 (10%) Strand=Plus/Plus Query 35064 AAATAT-GTCAAATCCCACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGT 35122 |||||| | ||||| ||||| ||||||||||||||| |||||| |||||| |||| || Sbjct 13418 AAATATAGAAAAATCTTACAAACAACAGTTTCACTGTACAATGTCTCGCCAATTACATGT 13477 Query 35123 CCAACTATTGTAACAGAGACAATGATATCCTCATTATTG----Ca-aaaata------aa 35171 ||||||||| || | ||||||||| ||| || || |||||| || Sbjct 13478 TTAACTATTGTTAC--AAACAATGATAAATGTATTTCTGTGAACATAAAATAGAAAAGAA 13535 Query 35172 aaaaTCTGATCTTTACAAAAAA 35193 || |||||| ||||||||||| Sbjct 13536 AATCTCTGATATTTACAAAAAA 13557 Score = 80.6 bits (88), Expect = 7e-11 Identities = 104/142 (73%), Gaps = 15/142 (11%) Strand=Plus/Minus Query 35064 AAATAT-GTCAAATCCCACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGT 35122 |||||| | ||||| ||||| ||||||||||||||| |||||| ||||||||||| || Sbjct 18866 AAATATAGAAAAATCTTACAAATAACAGTTTCACTGTACAATGTCTCGCCAAGTACATGT 18807 Query 35123 CCAACTATTGTAACAGAGACAATGATATCCTCATTATTGCaaaaataaaa---aaa---- 35175 ||||||||| ||| | |||||| ||| || ||| |||||| ||| Sbjct 18806 TTAACTATTGTTACA---TCGATGATAAATGTATTTCTGTAAACATAAAATATAAAAGAA 18750 Query 35176 ----TCTGATCTTTACAAAAAA 35193 |||||| ||||||||||| Sbjct 18749 AATCTCTGATATTTACAAAAAA 18728 >seq1156 Length=825589 Score = 80.6 bits (88), Expect = 7e-11 Identities = 72/87 (83%), Gaps = 4/87 (5%) Strand=Plus/Minus Query 35064 AAATAT-GTCAAATCCCACAAAAAACAGTTTCACTGTAAAATGTCGCGCCAAGTACACGT 35122 |||||| | |||||| ||||| ||||||||||||||| |||||| |||| |||||| || Sbjct 689055 AAATATAGAAAAATCCTACAAATAACAGTTTCACTGTACAATGTCTCGCC-AGTACATGT 688997 Query 35123 CCAACTATTGTAACAGAGACAATGATA 35149 ||||||||| || | ||||||||| Sbjct 688996 TTAACTATTGTTAC--AAACAATGATA 688972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132909859784520