Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq71 107 3e-18 >seq71 Length=15183 Score = 107 bits (118), Expect = 3e-18 Identities = 351/539 (65%), Gaps = 11/539 (2%) Strand=Plus/Minus Query 193646 TGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTA 193705 |||| | ||||| || || || || |||||| || ||||| |||||||| || Sbjct 4214 TGAGGTTTATAACCTCGGCGCACAGTCTCATGTGGCGGTGAGTTTTGAAATGCCAGAATA 4155 Query 193706 TACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGG 193765 | || | |||| ||||| | ||| | ||| | | || ||||| |||| | | || Sbjct 4154 TTCTACAGATGTGGATGCAATGGGA-CGCTTCGGTTGCTAGAAGCCATTCGCTTTCTAGG 4096 Query 193766 AATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCT 193825 | ||| ||| || | |||||||||||||| ||||| || || | || | Sbjct 4095 ATTGGGTAAAACAACGCGTTTTTATCAGGCATCTACATCTGAACTATACGG-GTTGGTGC 4037 Query 193826 AGGCA-CTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAA 193884 ||| | | || | | ||||| ||||| || ||||| ||| || || | ||| || | Sbjct 4036 AGGAAACACCGCAAAAGGAAACAACACCTTTCCATCCGCGCAGCCCCTACGCTGTGGCTA 3977 Query 193885 AGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTT 193944 | |||| | ||| ||||| | | ||||| |||||| | || | | | || || Sbjct 3976 AAATGTACGCTTACTGGATTACCGTAAATTACCGTGAGGCTTACGATATGTATGCCTGTA 3917 Query 193945 CTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGA 194004 || ||| | || || || ||| || | | ||||| ||||||||||| || || | Sbjct 3916 ACGGGATTTTGTTTAACCATGAAAGCCCGCGTCGTGGTGAAACATTTGTAACACGCAAAA 3857 Query 194005 TTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATC 194064 |||| | || | | || || ||||||| | | || || || | || ||| Sbjct 3856 TTACGCGTGGGCTGGCCAATATTGCTGTTGGTCTGGAAAAATGCCTGTACATGGGGAATA 3797 Query 194065 TTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCG-ATG---TGGTTA 194120 | || | | | || ||||| || ||||| ||||| || ||| ||| ||| | Sbjct 3796 TCAACAGTCTGCGTGACTGGGGGCATGCAAAAGATTACGT----GCGCATGCAATGGATG 3741 Query 194121 ATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGT 194179 ||| | ||||| || | || ||||||| ||| ||||| ||||| | |||||||||||| Sbjct 3740 ATGCTCCAACAAGAGCAGCCAGATGATTTTGTAATTGCAACAGGGGTACAGTATTCTGT 3682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807541511939360