Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq991 378 9e-100 seq185 179 5e-40 seq202 86.0 8e-12 >seq991 Length=691118 Score = 378 bits (418), Expect = 9e-100 Identities = 1222/1874 (65%), Gaps = 36/1874 (2%) Strand=Plus/Plus Query 61995 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62053 ||||| || |||| | || | || || ||||| || |||||||||||||| ||||| || Sbjct 357723 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAG 357781 Query 62054 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62112 || || || ||| ||||||||| || ||| || ||| ||| | || || || | Sbjct 357782 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCATAGTTGGGCTCGGCAA 357840 Query 62113 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62172 ||| || || | |||||||| ||||||||||| || || | || ||||||||||| | Sbjct 357841 CATGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 357900 Query 62173 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGA 62231 || | | ||| | || ||||| | || || || | |||| | || ||| Sbjct 357901 TGGTGGACTTGACGGAGATCTCCCACACCGTCTTGTACAGATCGCGCACATGCTGGGGGA 357960 Query 62232 AGGTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 62289 || | |||||||||| || |||| | || ||| ||||| || ||||||| Sbjct 357961 TGGCCTCGATATTCTGAATTGAGCCACGGCTGGAAATTATCTGGTTCTTCATATCATCAT 358020 Query 62290 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62349 ||| || | ||| || | | | || | || || | ||||| || || ||||| | Sbjct 358021 CCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAATTCGC 358080 Query 62350 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62409 | || | || | || || || ||||| |||| ||||| || | || || ||||| | Sbjct 358081 CGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGC 358140 Query 62410 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62469 ||| || || ||||| ||||| || ||||| || || |||| | | || || | || Sbjct 358141 CCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACAC 358200 Query 62470 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62529 | | | | |||| || || || |||| | ||| || | || || || Sbjct 358201 CATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAGAGGTTCGTTGGGACCTTGT 358260 Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGT-ACGATCCTACATATGTATCGTAT 62588 || ||||| || || || || || ||| | ||||| || || Sbjct 358261 CCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTGCCCT-CGTATGTTTCATAC 358319 Query 62589 GGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCG 62648 || ||||| || || ||||||||||| || || | ||| || ||||| || ||||| Sbjct 358320 GGACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCA 358379 Query 62649 AAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATA 62708 ||||||| || ||||| ||| ||| ||| || | || | | | ||||| Sbjct 358380 AAGATCTGCTGGTTTAGGAGACCTGCCTCCTCGCTTTCGTAAGGGAATCTCATCAGAATC 358439 Query 62709 AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 62768 || || || || || || |||| ||||| || || || | ||| ||| ||| || || Sbjct 358440 AAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGA--TT 358497 Query 62769 TCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT-GACA 62825 || | | ||||| | ||||||||||| || || ||||| ||||| ||||| | | || Sbjct 358498 TCCGGGCCTCTGGCAGGGGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAGCCA 358557 Query 62826 ATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC-CATCTATTACAA 62880 | ||| ||||| ||||||||||| ||| || | || | || | || | Sbjct 358558 CTGTCTTAGTGACC---TCCTTCAGTTTCTTAAAGTCGTACGTCTTCTCAGGGGTCACGA 358614 Query 62881 ACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62940 ||||||| | || | |||||||| || |||||||| | || | | || ||| | Sbjct 358615 ACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATACT 358674 Query 62941 GTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCT 63000 | || || |||||||||||||| |||||||| || || | ||| || ||||| |||| Sbjct 358675 CAACGATTTCTGTGCAAAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCT 358734 Query 63001 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 63060 | |||| || |||||||| | || || | ||| | ||||| || | ||| | || | Sbjct 358735 TCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAA 358794 Query 63061 TAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTC 63118 | || || ||| | | ||| ||||||| | | |||| | | ||||| | | | Sbjct 358795 TGATGGCGAACCACAGGGACT-GAGCCTTAACCGTCCGATTGGCTTTTCCTTCGGCCT-C 358852 Query 63119 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 63178 |||| |||||| | || || ||||| |||||||||| | || || ||||| | Sbjct 358853 GTATTTGAGGTACAATTGGTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACTT 358912 Query 63179 ATCCGGACACATCAACGACCACTCTCCGTCAT---CCTTCACTCGTTTCATAAAGAGATC 63235 | ||| ||||||| |||||| | || |||| ||| || || |||||||||||||| Sbjct 358913 GTGCGGGCACATCAGCGACCAGT-TC--TCATTTGCCTCAACGCGCTTCATAAAGAGATC 358969 Query 63236 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 63295 ||| ||||| || || ||||| ||| | | | || || || || || || ||||| Sbjct 358970 AGGTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCTT 359029 Query 63296 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63355 || || || | ||| | | || ||| |||||||| || |||||||| ||||| | | Sbjct 359030 CTTCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGGC 359089 Query 63356 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63415 ||||| || ||| || |||||||| | ||| | || || || | |||| || Sbjct 359090 GCCAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCGCAG 359149 Query 63416 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACG 63475 ||| |||| | || || || | ||||| || || | || || | || ||||||| Sbjct 359150 CATGGGAACGAGGCCATTGGAGGTCCCATTCGTGCCACATATCGAGGTGCCCTTGGCACG 359209 Query 63476 AAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533 || | | ||| || || || || || ||| || || || | || || || Sbjct 359210 GATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAGTGT 359267 Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 | | || | | ||||| || || ||| |||| | || || || ||| Sbjct 359268 TCCACCGACTTGAAAATACCTTCGATCGAATCGGATGTCATAGTCAGAAGGAAGCAGGAC 359327 Query 63594 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63653 || | ||| | || |||| | || || | || || || ||||| || || | Sbjct 359328 GAGAGTTGCGGTCGGTTAGTGGCAGCGGCGAACAGAGTGGGTGAGGCGTGTGTGAAGAAG 359387 Query 63654 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCT 63713 || || || | |||||| ||||||| ||| | || ||||| ||| ||||| Sbjct 359388 CGCTCTGACAGCAAATTGTAGGTCTCAACAGCGGCATCGATATCTTCACCATGGATTCCA 359447 Query 63714 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63773 | || || ||||||| ||| || || || | || || |||||| || | || | | Sbjct 359448 ATCGCCACGCGCATTAGCATATGTTGCGGCCGCTCGACAATCTTGCCATTACTCTTAAGC 359507 Query 63774 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63833 || || || ||| | || ||||| |||||||| ||||| |||||| || |||||| Sbjct 359508 AAATACGAACGTTCGAGGGTCTTAAAGCCAAAATAATTGTACCCAAAGTCACGATCGTAA 359567 Query 63834 ATAATAACCGAGTT 63847 || || |||||| Sbjct 359568 ATTATGGACGAGTT 359581 >seq185 Length=662383 Score = 179 bits (198), Expect = 5e-40 Identities = 535/823 (65%), Gaps = 3/823 (0%) Strand=Plus/Plus Query 33016 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33075 ||||| || ||||| || || ||||| || || || || |||| || || | ||| Sbjct 113994 TGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 114053 Query 33076 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 33135 ||||| | ||||| || | || || |||||| || ||||| || | || Sbjct 114054 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGG 114113 Query 33136 CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 33195 | ||| || || || || || || ||| | || || ||||| || || || || Sbjct 114114 CGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTC 114173 Query 33196 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 33255 || || || || | || | || || ||||||||| || || || || || Sbjct 114174 ACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTCG 114233 Query 33256 CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 33315 | | | || || |||| | |||| | ||| | ||||||| || || ||| Sbjct 114234 ATGATGCGCTCGCGACGCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCG 114293 Query 33316 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 33375 ||||||||||||||||| | || || |||||||| || || || || ||||| ||| Sbjct 114294 CAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGG 114353 Query 33376 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACT 33435 || ||||| || ||||| || || || || || || |||||||| || || || Sbjct 114354 CCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTCGACG 114413 Query 33436 GCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATCCACTTTTGA 33492 || ||||| ||||| | | ||||||| | ||| || | | ||||| | Sbjct 114414 GCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAGGAGATCCAGGACAGG 114473 Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552 ||||| || || || || || ||||| || || ||||||||||| || |||| Sbjct 114474 GCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGTAGTCC 114533 Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 | || ||| | ||||| ||||||| | ||| ||||| |||||||| | | Sbjct 114534 CGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGGACG 114593 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 || || ||||| ||||| || || ||||| || | ||||| || ||||| || || | Sbjct 114594 TTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCTCCTGA 114653 Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732 | || || || ||| || || || || || || || ||| ||||| ||||||| Sbjct 114654 CTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAACGCCAGC 114713 Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792 ||||| || |||| |||||| | || || ||| || | | ||| || Sbjct 114714 ACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAAATCCTTG 114773 Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 || | ||| || |||||||| |||||||| || ||||| |||| Sbjct 114774 GACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGCCT 114816 >seq202 Length=128089 Score = 86.0 bits (94), Expect = 8e-12 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 61995 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62053 ||||| || |||| | || | || || ||||| || ||||| |||||||| ||||| || Sbjct 56852 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAATACATTCCGGTTTTAAG 56910 Query 62054 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62112 || || || ||| ||||||||| || ||| || ||| || | || || || | Sbjct 56911 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCTTAGTTGGGCTCGGCAA 56969 Query 62113 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62172 ||| || || | |||||||| |||||||||| || || | || ||||||||||| | Sbjct 56970 CATGAATGTTGAACGATTGACTCCGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 57029 Query 62173 TGATCGTCTT 62182 || | | ||| Sbjct 57030 TGGTGGACTT 57039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622936641044960