Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq991 378 9e-100
seq185 179 5e-40
seq202 86.0 8e-12
>seq991
Length=691118
Score = 378 bits (418), Expect = 9e-100
Identities = 1222/1874 (65%), Gaps = 36/1874 (2%)
Strand=Plus/Plus
Query 61995 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62053
||||| || |||| | || | || || ||||| || |||||||||||||| ||||| ||
Sbjct 357723 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAG 357781
Query 62054 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62112
|| || || ||| ||||||||| || ||| || ||| ||| | || || || |
Sbjct 357782 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCATAGTTGGGCTCGGCAA 357840
Query 62113 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62172
||| || || | |||||||| ||||||||||| || || | || ||||||||||| |
Sbjct 357841 CATGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 357900
Query 62173 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGA 62231
|| | | ||| | || ||||| | || || || | |||| | || |||
Sbjct 357901 TGGTGGACTTGACGGAGATCTCCCACACCGTCTTGTACAGATCGCGCACATGCTGGGGGA 357960
Query 62232 AGGTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 62289
|| | |||||||||| || |||| | || ||| ||||| || |||||||
Sbjct 357961 TGGCCTCGATATTCTGAATTGAGCCACGGCTGGAAATTATCTGGTTCTTCATATCATCAT 358020
Query 62290 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62349
||| || | ||| || | | | || | || || | ||||| || || ||||| |
Sbjct 358021 CCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAATTCGC 358080
Query 62350 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62409
| || | || | || || || ||||| |||| ||||| || | || || ||||| |
Sbjct 358081 CGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGC 358140
Query 62410 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62469
||| || || ||||| ||||| || ||||| || || |||| | | || || | ||
Sbjct 358141 CCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACAC 358200
Query 62470 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62529
| | | | |||| || || || |||| | ||| || | || || ||
Sbjct 358201 CATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAGAGGTTCGTTGGGACCTTGT 358260
Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGT-ACGATCCTACATATGTATCGTAT 62588
|| ||||| || || || || || ||| | ||||| || ||
Sbjct 358261 CCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTGCCCT-CGTATGTTTCATAC 358319
Query 62589 GGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCG 62648
|| ||||| || || ||||||||||| || || | ||| || ||||| || |||||
Sbjct 358320 GGACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCA 358379
Query 62649 AAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATA 62708
||||||| || ||||| ||| ||| ||| || | || | | | |||||
Sbjct 358380 AAGATCTGCTGGTTTAGGAGACCTGCCTCCTCGCTTTCGTAAGGGAATCTCATCAGAATC 358439
Query 62709 AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 62768
|| || || || || || |||| ||||| || || || | ||| ||| ||| || ||
Sbjct 358440 AAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGA--TT 358497
Query 62769 TCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT-GACA 62825
|| | | ||||| | ||||||||||| || || ||||| ||||| ||||| | | ||
Sbjct 358498 TCCGGGCCTCTGGCAGGGGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAGCCA 358557
Query 62826 ATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC-CATCTATTACAA 62880
| ||| ||||| ||||||||||| ||| || | || | || | || |
Sbjct 358558 CTGTCTTAGTGACC---TCCTTCAGTTTCTTAAAGTCGTACGTCTTCTCAGGGGTCACGA 358614
Query 62881 ACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62940
||||||| | || | |||||||| || |||||||| | || | | || ||| |
Sbjct 358615 ACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATACT 358674
Query 62941 GTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCT 63000
| || || |||||||||||||| |||||||| || || | ||| || ||||| ||||
Sbjct 358675 CAACGATTTCTGTGCAAAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCT 358734
Query 63001 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 63060
| |||| || |||||||| | || || | ||| | ||||| || | ||| | || |
Sbjct 358735 TCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAA 358794
Query 63061 TAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTC 63118
| || || ||| | | ||| ||||||| | | |||| | | ||||| | | |
Sbjct 358795 TGATGGCGAACCACAGGGACT-GAGCCTTAACCGTCCGATTGGCTTTTCCTTCGGCCT-C 358852
Query 63119 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 63178
|||| |||||| | || || ||||| |||||||||| | || || ||||| |
Sbjct 358853 GTATTTGAGGTACAATTGGTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACTT 358912
Query 63179 ATCCGGACACATCAACGACCACTCTCCGTCAT---CCTTCACTCGTTTCATAAAGAGATC 63235
| ||| ||||||| |||||| | || |||| ||| || || ||||||||||||||
Sbjct 358913 GTGCGGGCACATCAGCGACCAGT-TC--TCATTTGCCTCAACGCGCTTCATAAAGAGATC 358969
Query 63236 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 63295
||| ||||| || || ||||| ||| | | | || || || || || || |||||
Sbjct 358970 AGGTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCTT 359029
Query 63296 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63355
|| || || | ||| | | || ||| |||||||| || |||||||| ||||| | |
Sbjct 359030 CTTCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGGC 359089
Query 63356 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63415
||||| || ||| || |||||||| | ||| | || || || | |||| ||
Sbjct 359090 GCCAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCGCAG 359149
Query 63416 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACG 63475
||| |||| | || || || | ||||| || || | || || | || |||||||
Sbjct 359150 CATGGGAACGAGGCCATTGGAGGTCCCATTCGTGCCACATATCGAGGTGCCCTTGGCACG 359209
Query 63476 AAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533
|| | | ||| || || || || || ||| || || || | || || ||
Sbjct 359210 GATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAGTGT 359267
Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593
| | || | | ||||| || || ||| |||| | || || || |||
Sbjct 359268 TCCACCGACTTGAAAATACCTTCGATCGAATCGGATGTCATAGTCAGAAGGAAGCAGGAC 359327
Query 63594 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63653
|| | ||| | || |||| | || || | || || || ||||| || || |
Sbjct 359328 GAGAGTTGCGGTCGGTTAGTGGCAGCGGCGAACAGAGTGGGTGAGGCGTGTGTGAAGAAG 359387
Query 63654 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCT 63713
|| || || | |||||| ||||||| ||| | || ||||| ||| |||||
Sbjct 359388 CGCTCTGACAGCAAATTGTAGGTCTCAACAGCGGCATCGATATCTTCACCATGGATTCCA 359447
Query 63714 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63773
| || || ||||||| ||| || || || | || || |||||| || | || | |
Sbjct 359448 ATCGCCACGCGCATTAGCATATGTTGCGGCCGCTCGACAATCTTGCCATTACTCTTAAGC 359507
Query 63774 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63833
|| || || ||| | || ||||| |||||||| ||||| |||||| || ||||||
Sbjct 359508 AAATACGAACGTTCGAGGGTCTTAAAGCCAAAATAATTGTACCCAAAGTCACGATCGTAA 359567
Query 63834 ATAATAACCGAGTT 63847
|| || ||||||
Sbjct 359568 ATTATGGACGAGTT 359581
>seq185
Length=662383
Score = 179 bits (198), Expect = 5e-40
Identities = 535/823 (65%), Gaps = 3/823 (0%)
Strand=Plus/Plus
Query 33016 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33075
||||| || ||||| || || ||||| || || || || |||| || || | |||
Sbjct 113994 TGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 114053
Query 33076 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 33135
||||| | ||||| || | || || |||||| || ||||| || | ||
Sbjct 114054 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGG 114113
Query 33136 CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 33195
| ||| || || || || || || ||| | || || ||||| || || || ||
Sbjct 114114 CGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTC 114173
Query 33196 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 33255
|| || || || | || | || || ||||||||| || || || || ||
Sbjct 114174 ACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTCG 114233
Query 33256 CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 33315
| | | || || |||| | |||| | ||| | ||||||| || || |||
Sbjct 114234 ATGATGCGCTCGCGACGCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCG 114293
Query 33316 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 33375
||||||||||||||||| | || || |||||||| || || || || ||||| |||
Sbjct 114294 CAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGG 114353
Query 33376 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACT 33435
|| ||||| || ||||| || || || || || || |||||||| || || ||
Sbjct 114354 CCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTCGACG 114413
Query 33436 GCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATCCACTTTTGA 33492
|| ||||| ||||| | | ||||||| | ||| || | | ||||| |
Sbjct 114414 GCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAGGAGATCCAGGACAGG 114473
Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552
||||| || || || || || ||||| || || ||||||||||| || ||||
Sbjct 114474 GCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGTAGTCC 114533
Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612
| || ||| | ||||| ||||||| | ||| ||||| |||||||| | |
Sbjct 114534 CGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGGACG 114593
Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672
|| || ||||| ||||| || || ||||| || | ||||| || ||||| || || |
Sbjct 114594 TTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCTCCTGA 114653
Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732
| || || || ||| || || || || || || || ||| ||||| |||||||
Sbjct 114654 CTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAACGCCAGC 114713
Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792
||||| || |||| |||||| | || || ||| || | | ||| ||
Sbjct 114714 ACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAAATCCTTG 114773
Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835
|| | ||| || |||||||| |||||||| || ||||| ||||
Sbjct 114774 GACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGCCT 114816
>seq202
Length=128089
Score = 86.0 bits (94), Expect = 8e-12
Identities = 136/190 (72%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 61995 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62053
||||| || |||| | || | || || ||||| || ||||| |||||||| ||||| ||
Sbjct 56852 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAATACATTCCGGTTTTAAG 56910
Query 62054 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62112
|| || || ||| ||||||||| || ||| || ||| || | || || || |
Sbjct 56911 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCTTAGTTGGGCTCGGCAA 56969
Query 62113 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62172
||| || || | |||||||| |||||||||| || || | || ||||||||||| |
Sbjct 56970 CATGAATGTTGAACGATTGACTCCGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 57029
Query 62173 TGATCGTCTT 62182
|| | | |||
Sbjct 57030 TGGTGGACTT 57039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622936641044960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |